Pairwise Alignments

Query, 1597 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens SBW25

Subject, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440

 Score =  332 bits (850), Expect = 3e-94
 Identities = 313/1158 (27%), Positives = 483/1158 (41%), Gaps = 180/1158 (15%)

Query: 426  KTATNGCPVSMVTGEELLTLT---DGALDGVLPFEWTRLYRTSAVEVDCGLGFGWSHSLA 482
            K  T G PV++ TG +L       D  L G+L  +W R Y +  +  D  LG GWS    
Sbjct: 284  KGCTLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLGMGWSVPYE 343

Query: 483  HRLAVSGN---SVVWTDHENRSTTLPLPSVSRPAITNSLAEAAIYLGAVPDELVLAQSSR 539
              LA   +     +W   +N    L L  +S      S  +   +      + V+   + 
Sbjct: 344  VELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVEDINE 403

Query: 540  -FYHFRD--------GALTAISDAYDNRLRIARDFLGRIERLDNGVGRSLFLRYASGRIV 590
              Y   D          L  + D   N L +  D  GR++ L +  G+++   + + R  
Sbjct: 404  GLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHP 463

Query: 591  AVDYQIQRIV--DEGPYVWVTEQTVVSYAYDGAGRLVSATNAVGES-EVYRYDEQHVILE 647
                ++ R+   + G       + +VSY Y   G+L    +A  +    + Y  +  +  
Sbjct: 464  QRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNS 523

Query: 648  RGLAGGASFYWEWE---------------------------QAGKAARCVRHWASFSQMD 680
              LA GA   +EW                            Q     R +RHW S  + +
Sbjct: 524  HQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGE-E 582

Query: 681  TRYAWD-DNGQVTVFNADGSQ---------EIYVHDQ-----------RARLVQRVDPDG 719
             R+ ++ + G+  V +  G +         E+Y H               +L++R+DP G
Sbjct: 583  YRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQG 642

Query: 720  AEHFKSYDEKGRLTVEQDPLGAVKAYQYDDAARLVALFPGEDEPTTYEHDNGFVRVVRRG 779
             E   SYD+ GRL   +DPLG  +  +Y                    H    ++V    
Sbjct: 643  GEWRYSYDDIGRLIETRDPLGRSEHIKY------------------LRHWALPIQVTDTA 684

Query: 780  EAVWKYERNDQGDVIRRTDPDGNATDYSYNKYGQLVGVWYPDHSCQTLVWNERGQLLEEQ 839
                +Y  +  G+++ + DP G  T Y Y+  G++  V       + L WN  GQLL  +
Sbjct: 685  GRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYR 744

Query: 840  CPNGGIKRYRYDDLGRKISQEDEHGALTQFEWNDVGRLVQIVLPSGDTRKYTYNPYGKIT 899
              +     Y YD  GR     +  G  T F ++  G LV+   P G   +Y  +  G++T
Sbjct: 745  DCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLT 804

Query: 900  SERDELGNITRYEYADGLHLISRRLNADGSQVNYRYDNVRLLLTEIENEVGETYRLQYHS 959
               D      ++ Y     L+ R  +A G  V +RYD    LL ++ NE  E+YR  +  
Sbjct: 805  RYIDPAQKTLQFRYDPSGRLVERT-DAMGYSVKFRYDAYGRLL-QLTNENDESYRFGWDE 862

Query: 960  NGLIQQETGFDGQRTAYVYDLNGNL---------QEKTEHGDDGSQLVTR-----YERDH 1005
               +  +   DG    Y Y++   +          E+    D+     T      +ERD 
Sbjct: 863  LDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDA 922

Query: 1006 AGRLVRKTLPDGNSVNYAYDRQGNLLSVD-----DGNWFLAYEYDVQNRLTAEHQGWGTL 1060
             GRLV K   DG + +Y YD   NLLS+           L Y YD   +L +E    G L
Sbjct: 923  IGRLVSKRTEDGTT-DYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLL 981

Query: 1061 RYGYDACGQLTNLRLPDNNRLTFNHDKGGHLSTVELNGAVLTSHQFNADREQQ-RTQGKL 1119
            +Y YD  G L  L LPD   L   +   GHL  + LNG V++  + +A  ++  RTQGKL
Sbjct: 982  QYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGKL 1041

Query: 1120 LSTYQHDHQGRLFNQSIGDAEGP-----VYRRHYDYDKSGNLT----------------- 1157
            ++  ++D  GRL  ++I   + P     +  + Y YD S NL                  
Sbjct: 1042 VTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRRGMSNAAN 1101

Query: 1158 -----------RLLD------TRKGEHHYHYDPLSRL-----TRADHSQGEQERFGHDPA 1195
                       R LD      T  G + Y YD   +L     +R +    + E F +D A
Sbjct: 1102 DENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKA 1161

Query: 1196 GNLLMQNRPGPDI---VAGNRLMIQGDHQYDYDAFGNLIRERRGKGHRLVTEYRYDCQHR 1252
            GNL      GP +   +  NR+++  D +Y YD FG L  +R G     V  + YD + R
Sbjct: 1162 GNLF----DGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNW--VQYFEYDAEQR 1215

Query: 1253 LIGTKKPNG---QTASYRYDPFGRRISKTVGDVTTE-------FFWKGDTLIAEHHAERH 1302
            L+  ++      +   + YDP GRRISK V             F W+G  L+ E  +   
Sbjct: 1216 LVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLA 1275

Query: 1303 RSYLYEP-DSFRPLALLEGFGPKETKAYHYQLDHLGTPQELTAADGEIVWSAHYRAYGEI 1361
              Y+Y   +S+ PLA ++G  P     +++    +G P++LT +DG  +W + +  +G+I
Sbjct: 1276 SLYVYATVESYDPLARVDG-KPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKI 1334

Query: 1362 TR----LDIGKIDNPLRFQGQYFDQESGLHYNRHRYYHPDIGRYLTPDPVKLTGGINAYQ 1417
                     G+  N LR QGQY D+E+GLH+N  R+Y PDIGR+ T DP+ + GG+N Y 
Sbjct: 1335 INEWHSQQNGREQN-LRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYS 1393

Query: 1418 YVPNPTGWVDPLGLSSCP 1435
            Y PN   + DPLGL  CP
Sbjct: 1394 YAPNIVNYSDPLGL--CP 1409