Pairwise Alignments

Query, 1597 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens SBW25

Subject, 1364 a.a., ClpB protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  352 bits (903), Expect = e-100
 Identities = 300/1063 (28%), Positives = 470/1063 (44%), Gaps = 88/1063 (8%)

Query: 433  PVSMVTGEE-LLTLTDGALDGVLPFEWTRLYRTSAVEVDCGLGFGWSHSLAHRLAVSGNS 491
            PV + TG++ LL  TD  L G LP   +R Y  S +E    LG GW  +    L      
Sbjct: 225  PVDVTTGQKILLPETDFTLPGRLPVTCSRFY-ASHLETVGLLGRGWRLNWETSLRDDDEH 283

Query: 492  VVWTDHENRSTTLPLPSVSRPAITNSLAEAAIYLGAVPD-ELVLAQSSRFYHF-----RD 545
            +  T  + R    P   ++ P       E  +YL  + D   VL  + R Y+       D
Sbjct: 284  ITLTGVQGRELRYPKTMLT-PGHQIFDPEEQLYLSRLHDGRYVLHYTDRSYYVFGDFDSD 342

Query: 546  GALTAISDAYDNRLRIARDFLG-RIERLDNGVGRSLFLRY----ASGRIVAVDYQIQRIV 600
            G    +     +R RI     G R+ R+ +  G  L L      A  R+  ++     +V
Sbjct: 343  GMAYLLFMETPHRQRIVFGHEGGRLVRIASSSGHHLLLHRTQTPAGERLSRIE-----LV 397

Query: 601  DEGPYVWVTEQTVVSYAYDGAGRLVSATNAVGESEVYRYDEQHVILERGLAGGASFYWEW 660
              G     T   +V Y YD  G+L    N  G        E  ++     A G +  + W
Sbjct: 398  QGG-----TRGNLVEYRYDDNGQLTGVVNRAGTQVRQFAYENGLMTAHSNATGFTCRYRW 452

Query: 661  EQAGKAARCVRHWASFSQMDTRYAWDDN---GQVTVFNADGSQEIYVHDQRARLVQRVDP 717
            ++   A R   H  S  +    Y +D +   G  TV    G    + +D+   +     P
Sbjct: 453  QELDGAPRVTEHDTSDGE---HYRFDYDFAAGTTTVTGRQGETWQWWYDRETYITAHRTP 509

Query: 718  DGAEHFKSYDEKGRLTVEQDPLGAVKAYQYDDAARLVALFPGEDEPTTYEHDNGFVRVVR 777
             G  +  +Y+E       + P G   AY+YD   R+V     E   T  + +  F  + R
Sbjct: 510  GGGMYRFTYNEDHFPVNIELPGGRTVAYEYDIQNRVVKTTDPEGRVTQTQWNGEFDEITR 569

Query: 778  RG---EAVWKYERNDQGDVIRRTDPDGNATDYSYNKYGQLVGVWYPDHSCQTLVWNERGQ 834
                 +AVWK + N  G  ++ TDP+G  T Y+Y++ GQ+              ++ RGQ
Sbjct: 570  TALDDDAVWKTQYNAHGQPVQETDPEGRVTQYAYDEQGQMCSRTDAAGGTVVTAFDSRGQ 629

Query: 835  LLEEQCPNGGIKRYRYDDLGRKISQEDEHGALTQFEWNDVGRLVQIVLPSGDTRKYTYNP 894
            +      +G    Y +D+ G      D  G + +  +N +G    +  P     +YT+N 
Sbjct: 630  MTRYTDCSGRSTGYDHDEDGNLTRVTDAEGKVVRISYNRLGLPETVNSPGKQQDRYTWNA 689

Query: 895  YGKITSERDELGNITRYEYADGLHLISRRLNADGSQVNYRYDNVRLLLTEIENEVGETYR 954
             G ++S R   G++  + Y     L++   + +  +  ++Y      +  + N  G  YR
Sbjct: 690  LGLMSSHRRITGSVESWRYTPR-GLLAAHTDEEKRETRWQY-TPEGRVAALTNGNGAQYR 747

Query: 955  LQYHSNGLIQQETGFDGQRTAYVYDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTL 1014
              + ++G + +E   DG    ++ D +G L      G  G       +RD  GRL+R   
Sbjct: 748  FSHDADGRLVREVRPDGLSRTFILDDSGYLTAIQTTGTQGGVRRETQQRDALGRLLRTEN 807

Query: 1015 PDGNSVNYAYDRQGNLLSV-----DDGNW-------FLAYEYDVQNRLTAEHQGWGTLRY 1062
              G    ++Y+R   + +V     + G          + +EYD    LTAEH G G++ Y
Sbjct: 808  EHGQRT-FSYNRLDQITAVTLTPTEAGQQQHRMQADTVRFEYDRSGWLTAEHAGNGSICY 866

Query: 1063 GYDACGQLTNLRLPDNNRLTFNHDKGGHLSTVELNGAVLTSHQFNA-DREQQRTQGKLLS 1121
              DA G  T++ LPD   LT  +   GHL    L+G  ++ ++ ++  R+  RTQG+L +
Sbjct: 867  QRDALGNPTDITLPDGQHLTHLYYGSGHLLQTALDGLTVSEYERDSLHRQIMRTQGQLAT 926

Query: 1122 TYQHDHQGRL-FNQSIGDAEGPVY------------RRHYDYDKSGNLTRLLDTRKGEHH 1168
               +D  G L + +S+     PV              R Y ++  G +  + D  +G   
Sbjct: 927  YSGYDDDGLLSWQRSLASGSAPVLPGQRPARQGCVTSRDYYWNNHGEVGTIDDGLRGSVV 986

Query: 1169 YHYDPLSRLTRADHSQGEQERFGHDPAGNLLMQNRPGPDIVAGNRLMIQGDHQYDYDAFG 1228
            Y YD    LT       + +R+ +D AGNLL  +  G   V  NRL   G  +Y Y+ +G
Sbjct: 987  YSYDRSGYLTGRSGQMYDHDRYYYDKAGNLL--DNEGQGAVMSNRLPGCGRDRYGYNEWG 1044

Query: 1229 NLIRERRGKGHRLVTEYRYDCQHRLIGTKKPNGQTASYRYDPFGRRISK-TVGDVT---- 1283
             L   R         +  ++ Q +L      N +T  Y YD  GRR  K T G  T    
Sbjct: 1045 ELTTRRD-------QQLEWNAQGQLTRVISGNTET-HYGYDALGRRTRKATYGRHTGHTA 1096

Query: 1284 ---TEFFWKGDTLIAEHHAERH-RSYLYEPDS-FRPLALLEGFGPKETKAYHYQLDHLGT 1338
               T+F W+G  L+ E+  ++  R+YLY+ +  + P+A + G G +  + ++Y  D  GT
Sbjct: 1097 RSRTDFVWEGFRLLQENVQQQGWRTYLYDAEQPYTPVASVTGRG-ESRQVWYYHTDVTGT 1155

Query: 1339 PQELTAADGEIVWSAHYRAYGEITRLDIGK----IDNPLRFQGQYFDQESGLHYNRHRYY 1394
            PQE+TAADG +VW+ + R +GE    DI         PLR  GQYFD E+GLHYN  RYY
Sbjct: 1156 PQEVTAADGTLVWAGYIRGFGE-NAADISNSGAYFHQPLRLPGQYFDDETGLHYNLFRYY 1214

Query: 1395 HPDIGRYLTPDPVKLTGGINAYQYVPNPTGWVDPLGLSSCPGR 1437
             P+ GR+++ DP+ L GG+N YQY PNP  ++DPLGL++  GR
Sbjct: 1215 APECGRFVSQDPIGLRGGLNLYQYAPNPLKYIDPLGLTATVGR 1257