Pairwise Alignments

Query, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 564/1035 (54%), Positives = 699/1035 (67%), Gaps = 22/1035 (2%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLI 62
            Y EL CLSNFSF RGAS   EL ERA   GY ALA+ DEC+LAG+VRA  AAK     L+
Sbjct: 9    YVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKKHRFQLL 68

Query: 63   IGSE--VRIENGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLLEDFD-QPLPGLL 119
            IGS+  VR +    LV+L  +L+GY +LC  IT  RR A KGSYRL + D D Q L   +
Sbjct: 69   IGSQFQVRCDAPFTLVVLACNLNGYGNLCEFITRLRRSAPKGSYRLAIGDIDAQALADCV 128

Query: 120  ALWVAE---DSDTQASI-QWLRRTFAERLWLAVHLHCGQDDA---HRLEQRLNLAASLRI 172
             + V +   D D   ++ +WL + F  R WL V   C  DD    HRL Q   L A   +
Sbjct: 129  VIAVPDRHSDQDPMDTVARWLLQHFRGRCWLGVEQLCRFDDEMRLHRLRQSSELTA---V 185

Query: 173  PAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPHAL 232
            P VA GDV MH R R+ L D +TA R   P+ E G  L P+ E+ LR    L  LYP  L
Sbjct: 186  PLVAVGDVRMHVRSRKPLHDVLTATRIGKPLTECGFVLEPSAEQRLRGRLTLGQLYPADL 245

Query: 233  LDETQAIARRCTFDLSQLRYHYPRELVPEGHDAESWLRAVTEAGIAQRWPQGVDAHTLQQ 292
            L ET A+A RC F L +LRY YP E++PEG   +S LR +TEAG  +RWPQG      QQ
Sbjct: 246  LAETLAVAARCDFSLDELRYQYPSEVIPEGETPQSHLRQLTEAGARRRWPQGTPEAFAQQ 305

Query: 293  IHKELALISELGYESYFLTVHDIVRFARSRSILCQGRGSAANSAVCFALGITEIDPSLTS 352
            I  EL LI+   YE YFLTVHDIV FARS+ ILCQGRGSAANS VC+ LGITE+DP  T 
Sbjct: 306  IEHELELIAYKQYEHYFLTVHDIVAFARSKDILCQGRGSAANSVVCYCLGITEVDPGRTG 365

Query: 353  MLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDV 412
            +LFERF+S+ER+EPPDIDVDFEHERREEV+QY++ +YGR RAALTA V SY    A+RDV
Sbjct: 366  LLFERFISRERDEPPDIDVDFEHERREEVIQYLYGKYGRERAALTATVISYRPRSALRDV 425

Query: 413  AKALGLPPDQVNALADCCGRWSDDAPPLERLREGGFDPQSPILRRVLTLTQQLIGFPRHL 472
             KALG     ++ LA     W   A   ERL+E G D     +R++L LT  L+GFPRHL
Sbjct: 426  GKALGFAEGSLDVLARQSRWWDGHAIAPERLQEAGLDTGDLKVRQLLELTSTLMGFPRHL 485

Query: 473  SQHPGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRC 532
            SQH GGFV+++ PL  LVP+ENA M +RT+I+WDKDDLDAVGLLKVD+LALGML+A+R+ 
Sbjct: 486  SQHTGGFVLTQLPLSRLVPIENATMKDRTVIEWDKDDLDAVGLLKVDVLALGMLTALRKA 545

Query: 533  FDLLRRHRNRDFSLASLPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLV 592
              L+   + R F +  +P  D  TY M+  ADT+GVFQIESRAQMSMLPRLRP+++YDLV
Sbjct: 546  MALIGEKQGRAFGMQDIPDGDDPTYDMVCAADTVGVFQIESRAQMSMLPRLRPRSYYDLV 605

Query: 593  IEVAIVRPGPIQGGMVHPYLRRRNKEEETTYPSPE----LEVVLQRTLGIPLFQEQVMQI 648
            IEVA+VRPGPIQGG VHPYL RR  +   ++P P     L+  L RT+G+P+FQEQ MQI
Sbjct: 606  IEVALVRPGPIQGGAVHPYLNRRQGKVPVSFPGPHGGRALKAALGRTMGVPIFQEQCMQI 665

Query: 649  AMVAADYGPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFG 708
            A+++A + PGEAD+LRR+MAAWKRHG ++ ++ERL  GM   GY  EFA  IFEQIKGF 
Sbjct: 666  AVLSAGFTPGEADELRRAMAAWKRHGNVQKYEERLVKGMTDRGYELEFAQSIFEQIKGFS 725

Query: 709  SYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIR 768
            SYGFPESHAASFALL Y S W+KCH PA F  AL+NS P+GFY+P Q++QDA+RH + +R
Sbjct: 726  SYGFPESHAASFALLVYVSAWIKCHHPAEFLTALLNSQPLGFYTPSQLVQDAKRHGVVVR 785

Query: 769  PVDVQASDWDCSLEPIDGAQPAIRMGLRMIAGLREEEGRRIETARERGVFSDIADLDARA 828
            PVDV  SD D +++    A  A+R+G+R+++G+ ++   RI  AR +  F +  DL  RA
Sbjct: 786  PVDVLHSDRDSTID----ADGAVRLGMRLVSGIGQDATERIVQARAQQAFRNAQDLARRA 841

Query: 829  GLDARTQALLADAGALRALADNRHKARWEVAGVHKQLGLFAGLPSPDEAVVALPAPTVGE 888
            GLD      LA A AL  L+ +R +  W+ A +     L  G P  DEA +ALPA   GE
Sbjct: 842  GLDQPQMKALAAADALMGLSGHRRQQVWDAAALRSPPALLKGAP-VDEAPLALPAAPEGE 900

Query: 889  DLQADYATVGTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTA 948
             +  DYA+ G TL  HPLALLR EL KRR  ++ +L     GR V   G+VT RQ+PGT+
Sbjct: 901  AVVWDYASTGLTLRRHPLALLREELAKRRLMTAAQLQDAPDGRLVRHCGIVTLRQQPGTS 960

Query: 949  SGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLLKVDGRWEAVGEVRHLIAGRLTDL 1008
            SGV FV+LEDE G + V+VW+ + ERQR  L G+RLL V GRW+  GEVR+LIAG L DL
Sbjct: 961  SGVVFVSLEDETGVVQVIVWQRIRERQRAVLTGARLLAVYGRWQREGEVRNLIAGHLEDL 1020

Query: 1009 TPLLEGIPVRSRDFH 1023
            TPLL G+   SRDFH
Sbjct: 1021 TPLLNGLSTVSRDFH 1035