Pairwise Alignments

Query, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

Subject, 1160 a.a., DNA polymerase III alpha subunit from Escherichia coli BL21

 Score =  357 bits (917), Expect = e-102
 Identities = 294/1060 (27%), Positives = 498/1060 (46%), Gaps = 84/1060 (7%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLI 62
            +  L   S++S   G +    L ++A   G  ALAITD   L G+V+ + A     +  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 63   IGSEVRIENG------PKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLLEDFDQPL- 115
            +G++  ++          L +L  + +GYQ+L  LI+ A +R    +  ++  D+   L 
Sbjct: 66   VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125

Query: 116  PGLLALWVAEDSDTQAS------------IQWLRRTFAERLWLAVHLHCGQDDAHRLEQR 163
             GL+ L      D   S            + +    F +R +L +      D+   L   
Sbjct: 126  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185

Query: 164  LNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            + LA +  +P VA  DV           +   AI     + +     + + ++++RS + 
Sbjct: 186  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245

Query: 224  LAALY---PHALLDETQAIARRCTFDLSQLRYHYPRELVPEGH-DAESWLRAVTEAGIAQ 279
            +  L+   P AL + T  IA+RC   +    Y  P+   P G    E +L    + G+ +
Sbjct: 246  MCELFADIPEALAN-TVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVKRAKEGLEE 302

Query: 280  R----WPQGVDAHTL-----QQIHKELALISELGYESYFLTVHDIVRFARSRSI-LCQGR 329
            R    +P   +         +++  EL +I+++G+  YFL V + +++++   + +  GR
Sbjct: 303  RLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362

Query: 330  GSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRY 389
            GS A S V +AL IT++DP    +LFERFL+ ER   PD DVDF  E+R++V+++V   Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422

Query: 390  GRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAPPLERLREGGFD 449
            GR   +      +  A   +RDV + LG P        D   +     P +   +    +
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHP----YGFVDRISKLIPPDPGMTLAKAFEAE 478

Query: 450  PQSPIL-------RRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTI 502
            PQ P +       + ++ + ++L G  R+  +H GG VI+   +    P+      +  +
Sbjct: 479  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538

Query: 503  IQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRD----FSLASLPKEDPATYA 558
             Q+DK D++  GL+K D L L  L+ I    +++ + R ++      +A++P +D  ++ 
Sbjct: 539  TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598

Query: 559  MISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKE 618
            M+ +++T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++  
Sbjct: 599  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 619  EETTYPSPE-----LEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRH 673
            EE +YP  +     L+ VL+ T GI L+QEQVMQIA V + Y  G AD LRR+M   K+ 
Sbjct: 659  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717

Query: 674  GGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 733
              +   +     G  KNG + E A +IF+ ++ F  YGF +SH+A++AL++Y + WLK H
Sbjct: 718  EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777

Query: 734  EPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRM 793
             PA F  A++ +          ++ +  R  L+I P D+ +  +   +   DG    I  
Sbjct: 778  YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-DG---EIVY 833

Query: 794  GLRMIAGLREEEGRRIETARER-GVFSDIADLDARAG---LDARTQALLADAGALRALAD 849
            G+  I G+ E     I  AR + G F ++ DL AR     L+ R    L  +GA   L  
Sbjct: 834  GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893

Query: 850  NR---------------HKARWEVAGVHKQLGLFAGLPSPDEAVVALPAPTVGE-DLQAD 893
            +R                 A+ E  G     G+ A  P   E   A   P   +  L  +
Sbjct: 894  HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953

Query: 894  YATVGTTLGPHPLALLRTEL-RKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTASG-- 950
              T+G  L  HP+     E+ R       +++   E G+ ++ AGLV   +   T  G  
Sbjct: 954  RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013

Query: 951  VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLLKVDGR 990
            +   TL+D  G L V+++ D  ++ +Q L   R+L V G+
Sbjct: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053