Pairwise Alignments

Query, 397 a.a., site-specific integrase from Pseudomonas fluorescens SBW25

Subject, 411 a.a., Rac prophage; integrase from Escherichia coli BL21

 Score =  106 bits (265), Expect = 1e-27
 Identities = 110/412 (26%), Positives = 175/412 (42%), Gaps = 58/412 (14%)

Query: 8   LPAGMDLHHGSIRIRFMWNGSRRSETLP-YPPTQKGIKSASQVVDQVKGLIKLGLLDDDK 66
           LP G+++    IRI FM+ G R  ETL  +  T   IK A  +   +   I  G   + +
Sbjct: 4   LPTGVEIRGRYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRSLIVHEINSG---EFE 60

Query: 67  YAELFPSSSNVAGGKI-------NFGEYAQLWLDSREV------VGGTKANYKGA----- 108
           Y   FP SS   G K+        FGE   +W   +E       +  TK+  K       
Sbjct: 61  YLRRFPQSST--GAKMVTTRVIKTFGELCDIWTKIKETELTTNTMKKTKSQLKTLRIIIC 118

Query: 109 ----LNRYWMPGLALVRIDLITTTLLRRVMAASEWKSPGVKR--NAISKLSTILNSAMSE 162
               ++      +   R +L+    L      S  K   V+   N I+ L ++L  A   
Sbjct: 119 ESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQS 178

Query: 163 ELIPKNPAAILELPKRSKKEIDPFTLEEANLIIA--KMYEHDHWPSTIYAAFFEFVFFTG 220
             I   P   ++  +R++ + DP +  E N ++   K    + W         +F  ++G
Sbjct: 179 GFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQSQNLW---------KFAVYSG 229

Query: 221 MRLSEALAMRWDEVDEQKKTAHVCRGVALGEVVERTKTG-GDRFVLLNDRALHALDFAKE 279
           +R  E  A+ W++VD +K   +V R + + ++    KT  G R V L   AL AL    +
Sbjct: 230 LRHGELAALAWEDVDLEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYK 289

Query: 280 YAERRKK----------GKGKVLETPYIFPP----SKNAAYVRQTSDLHKQWVPTLKALN 325
                +K          G+ +  +  ++F P     K   Y    S L  +W   +K   
Sbjct: 290 LTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYY-SVSSLGARWNAAVKRAG 348

Query: 326 IRRRPPYNCRHTYATICIMSGMNPAFISQQLGH-SVQMLLSTYARWINSSSD 376
           IRRR PY+ RHT+A   + +G NPAFI+ Q+GH + QM+   Y  WI+  +D
Sbjct: 349 IRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMND 400