Pairwise Alignments

Query, 508 a.a., L-arabinose ABC transporter ATP-binding protein AraG from Pseudomonas fluorescens SBW25

Subject, 501 a.a., Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  415 bits (1067), Expect = e-120
 Identities = 223/493 (45%), Positives = 327/493 (66%), Gaps = 5/493 (1%)

Query: 12  AQLSFNGIGKTFPGVKALDGISFTAYPGQVHALMGENGAGKSTLLKILGGAYIPSSGTLQ 71
           A L   GI K FPGVKAL G +   YPG+V AL+GENGAGKST++K+L G Y   +G+L 
Sbjct: 3   ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSLL 62

Query: 72  -IGEQTMAFKNAADSIASGVAVIHQELHLVPEMTVAENLFLGH-LPSRFGVVNRSLLRQQ 129
            +G++T  F     S  +G+ +IHQEL+L+P++T+AEN+FLG    +RFG ++   +  +
Sbjct: 63  WLGKET-TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKKMYAE 121

Query: 130 ALACLKGLADEIDPQEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLM 189
           A   L  L       + +G LS+G +Q+VEIAK LS  + VI  DEPT +L+  E D L 
Sbjct: 122 ADHLLAKLNLRFKSDKLVGELSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETDSLF 181

Query: 190 AIITRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFDDMSALTHDQLVTCMVGR 249
            +I  L+ +G+ ++Y+SHRM+E+F IC+ VTVF+DG+++    +++ LT D L+  MVGR
Sbjct: 182 RVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAE-REVATLTEDSLIEMMVGR 240

Query: 250 DIQDIYDYRPREQGEVALKVDGLLGPGLREPISFNVRKGEILGLFGLVGAGRTELFRLLS 309
            ++D Y +     GE+ LKVD L GPG+ + +SF +RKGEILG+ GL+GAGRTEL ++L 
Sbjct: 241 KLEDQYPHLDNAPGEIRLKVDNLCGPGVND-VSFVLRKGEILGISGLMGAGRTELMKVLY 299

Query: 310 GLERASAGQLELCGQALQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAH 369
           G    ++G + L G  +  RSP+D +A G++   EDRK++G++   SV EN++++A    
Sbjct: 300 GAMPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALDYF 359

Query: 370 SAFGWLLRDGWEKRNADQQIQAMKVKTPNAAQKIMYLSGGNQQKAILGRWLSMPMKVLLL 429
           S  G  L+   E++     I+   VKTP+  Q I  LSGGNQQK  + R L    KVL+L
Sbjct: 360 SRAGGSLKHKDEQQAVGDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLIL 419

Query: 430 DEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGISDRILVLCEGAMRGEQTR 489
           DEPTRG+D+GAK EIYQ+I+   A G+++I+VSS++ EV+G+SDRI+V+ EG + GE TR
Sbjct: 420 DEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTR 479

Query: 490 EHATESNLLQLAL 502
           E AT+  L+  A+
Sbjct: 480 EQATQEVLMAAAV 492



 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 8/226 (3%)

Query: 282 SFNVRKGEILGLFGLVGAGRTELFRLLSGLERASAGQLELCGQALQLRSPRDAIAAGVLL 341
           + NV  G ++ L G  GAG++ + ++L+G+    AG L   G+      P+ +  AG+ +
Sbjct: 24  ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSLLWLGKETTFNGPKSSQEAGIGI 83

Query: 342 CPEDRKKEGIIPLSSVAENINISARGAHSAFGWLLRDGWEKRNADQQIQAMKVKTPNAAQ 401
             ++     +IP  ++AENI +  R   + FG +    W+K  A+      K+     + 
Sbjct: 84  IHQELN---LIPQLTIAENIFLG-REFVNRFGKI---DWKKMYAEADHLLAKLNLRFKSD 136

Query: 402 KIM-YLSGGNQQKAILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIV 460
           K++  LS G+QQ   + + LS   KV+++DEPT  +       ++++I  L +QG  ++ 
Sbjct: 137 KLVGELSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETDSLFRVIRELKSQGRGIVY 196

Query: 461 VSSDLMEVMGISDRILVLCEGAMRGEQTREHATESNLLQLALPRSL 506
           +S  + E+  I D + V  +G    E+     TE +L+++ + R L
Sbjct: 197 ISHRMKEIFEICDDVTVFRDGQFIAEREVATLTEDSLIEMMVGRKL 242