Pairwise Alignments

Query, 334 a.a., arabinose ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 24/266 (9%)

Query: 14  AVAVSAMSLSGLLLA------AEEVKIGFLVKQAEEPWFQTEWAFAEKAGKEHG--FTVI 65
           AVAV A + + L L+      A + K+G ++K     +F T    A+   KEH   F +I
Sbjct: 11  AVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMI 70

Query: 66  KIAVPDGEKTLSAID---SLAANGAKGFVICPPDVSLGPAIVAKAKANGLKVIAVDDRF- 121
              + +   T + ID    +        VI P D      ++ KA   G+KV+ +D+R  
Sbjct: 71  TNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLD 130

Query: 122 VDAKGAFMEDVPYLGMAAFEVGQKQGAAMAAEAKKRGWDWKDTYAVINTFNELDTGKKRT 181
            D   +   D+P++G        ++G+ +  +   +     D   +I         ++RT
Sbjct: 131 PDVLKSKNLDIPFVG-----PDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRT 185

Query: 182 DGSVKSLEEAGIPKDHILFTAAKTLDVPGSMDATNSALVKLPSGAKNLIIGGMNDNTVLG 241
            G   +++ AG+    I+ T +   ++       ++ L + P   K L+ G  NDN  LG
Sbjct: 186 AGYKDAMDAAGM---KIVSTQSGNWEIDQGQKVASAMLSEYPD-LKALLAG--NDNMALG 239

Query: 242 GVRATESAGFKAANVIGIGINGTDAI 267
            V A  +AG KA  V+ +G +  +AI
Sbjct: 240 AVSAVRAAG-KAGKVLVVGYDNIEAI 264