Pairwise Alignments

Query, 334 a.a., arabinose ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

Subject, 329 a.a., L-arabinose transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  369 bits (947), Expect = e-107
 Identities = 191/322 (59%), Positives = 243/322 (75%), Gaps = 6/322 (1%)

Query: 13  AAVAVSA-MSLSGLLLAAEEVKIGFLVKQAEEPWFQTEWAFAEKAGKEHGFTVIKIAVPD 71
           AA+ ++A MS S +   AE +K+GFLVKQ EEPWFQTEW FA+KAGK+ GF VIKIAVPD
Sbjct: 9   AAIGLAAVMSQSAM---AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD 65

Query: 72  GEKTLSAIDSLAANGAKGFVICPPDVSLGPAIVAKAKANGLKVIAVDDRFVDAKGAFMED 131
           GEKTL+AIDSLAA+GAKGFVIC PD  LG AIVAKA+   +KVIAVDD+FV+AKG  M+ 
Sbjct: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125

Query: 132 VPYLGMAAFEVGQKQGAAMAAEAKKRGWDWKDTYAVINTFNELDTGKKRTDGSVKSLEEA 191
           VP + MAA ++G++QG  +  E +KRGWD K++  +  T NELDT ++RT GS+ +L+ A
Sbjct: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185

Query: 192 GIPKDHILFTAAKTLDVPGSMDATNSALVKLPSGAKNLIIGGMNDNTVLGGVRATESAGF 251
           G P+  I     K+ D+PG+ DA NS LV+ P   K+ +I GMND+TVLGGVRATE  GF
Sbjct: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE-VKHWLIVGMNDSTVLGGVRATEGQGF 244

Query: 252 KAANVIGIGINGTDAIGELKKPN-SGFFGSMLPSPHIEGYNTALMMYEWVTKGTEPPKYT 310
           KAA++IGIGING DA+ EL K   +GF+GS+LPSP + GY ++ M+Y WV K  EPPK+T
Sbjct: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304

Query: 311 AMDEVTLITRENFKEELTKIGL 332
            + +V LITR+NFKEEL K GL
Sbjct: 305 EVTDVVLITRDNFKEELEKKGL 326