Pairwise Alignments

Query, 310 a.a., ABC transporter ATP-binding protein from Pseudomonas fluorescens SBW25

Subject, 308 a.a., predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  394 bits (1013), Expect = e-114
 Identities = 206/303 (67%), Positives = 241/303 (79%), Gaps = 1/303 (0%)

Query: 1   MSSALSIRQLTKTYGNGFQALSGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSG 60
           M+ AL ++QL KTY  G QAL GIDL V  GDF+ALLGPNGAGKSTTIGI+S+LVNKTSG
Sbjct: 1   MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60

Query: 61  TVNIFGHDLDKSPAALKRSIGVVPQEFNFNQFEKTFDIVVTQAGYYGIPAKVAKERAEQY 120
            V++FG+DL+K     KR +G+VPQEFNFN FE    IVV QAGYYG+  K A  R+E+Y
Sbjct: 61  RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120

Query: 121 LTQLGLWDKRDVPSRSLSGGMKRRLMIARALVHEPRLLILDEPTAGVDIELRRSMWTFLT 180
           L QL LW KR+  +R LSGGMKRRLMIARAL+HEP+LLILDEPTAGVDIELRRSMW FL 
Sbjct: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180

Query: 181 ELNEKGITIILTTHYLEEAEQLCRNIGIIDHGTIVENTSMRNLLGQLHVETFLLDLKNNL 240
           +LN+KG TIILTTHYLEEAE LCRNIGII HG +VENTSM+ LL +L  ETF+LDL    
Sbjct: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPK- 239

Query: 241 SVPPQLLGYPSRLVDSHTLEVQVDKAMGITALFTQLATQNIEVLSLRNKTNRLEELFVSL 300
           S  P+L GY  RLVD+ TLEV+V +  GI ++FTQL+ Q I+VLS+RNK NRLEELFVSL
Sbjct: 240 SPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSL 299

Query: 301 VEK 303
           V +
Sbjct: 300 VNE 302