Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1250 bits (3235), Expect = 0.0
 Identities = 640/1146 (55%), Positives = 835/1146 (72%), Gaps = 6/1146 (0%)

Query: 1    MPVLRLPLLPAAAGKQHW-GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELS 59
            MP  +   LP  AG Q   G L GAA +  +AE A       +L+  D Q+A RL  E+ 
Sbjct: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60

Query: 60   FFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAP 119
             F  D  V++  DWETLPYD FSPHQ+IIS R+++LY+LP +  GVL+VP+ T + R+ P
Sbjct: 61   QFT-DQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCP 119

Query: 120  TKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLP 179
              +L G +LV+  GQ+L  + +R +L+++GYR VD V EHGE+A RGAL+DLFPMGS+ P
Sbjct: 120  HSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQP 179

Query: 180  YRIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDF 239
            YR+D FDDEI++LR FD + QR++++V++I LLPA EFP  K A+  F++++R+ F+V  
Sbjct: 180  YRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239

Query: 240  RRCPIFQDLSSGITPAGIEYYLPLFFDET-STLFDYLPQDTQVFSLPGIEQAAENFWNDV 298
                I+Q +S G  PAGIEY+ PLFF E    LF Y P +T V +   +E +AE F  D 
Sbjct: 240  DAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADT 299

Query: 299  RNRYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLP 358
              R+E R VDP RPLLPP  L+L V++ F+ LK WPR+      +   +         LP
Sbjct: 300  LARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLP 359

Query: 359  DLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFV 418
            DLAIQA+   PL+AL  FL  F G V+F+ ES GRRE L ELL R+K+ PK +    +  
Sbjct: 360  DLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQ 419

Query: 419  KSKERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTE 478
             +   L I  A  + G +     LALI ES L G+RV  RRR + R   N D +I+NL E
Sbjct: 420  DAGRYLMIGAA--EHGFIDTQRNLALICESDLLGERVA-RRRLDSRRTINPDTLIRNLAE 476

Query: 479  LREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSD 538
            L  G PVVH++HGVGRY G+ TLE      E+L + YA  AKLYVPV+SLHLI+RY G  
Sbjct: 477  LHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536

Query: 539  DALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAG 598
            +  APLH+LG + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AF   +  Y  F   
Sbjct: 537  EESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596

Query: 599  FAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILV 658
            F FE TPDQ   I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV   KQVA+LV
Sbjct: 597  FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLV 656

Query: 659  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSD 718
            PTTLLAQQHY++FRDRFA+WPV +E++SRF+SAKE    +A+ AEGKIDI+IGTHKLL  
Sbjct: 657  PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQS 716

Query: 719  DVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 778
            DVK+++LGL+I+DEEHRFGVR KE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSII
Sbjct: 717  DVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII 776

Query: 779  ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 838
            ATPPARRL+V+TFV E +   V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEA
Sbjct: 777  ATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836

Query: 839  RIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 898
            RIAIGHGQMRER+LE+VM+DF+H+RFNVL+ +TIIETGID+P+ANTIIIERAD FGLAQL
Sbjct: 837  RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896

Query: 899  HQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 958
            HQLRGRVGRSHHQAYA+LLTP  + +T+DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAG
Sbjct: 897  HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956

Query: 959  ELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDY 1018
            ELLG+ QSG ++ +GF+LYME+LE AV A++ G +P+L+       E+ LR+P+L+P+D+
Sbjct: 957  ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016

Query: 1019 LPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIK 1078
            +PDV+ RL  YKRIASA +E  L++++VE+IDRFGLLP+P +NL+ +  L+ QA++LGI+
Sbjct: 1017 IPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIR 1076

Query: 1079 KVDAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLE 1138
            K++   +GG IEF  +  VDP  LI L+Q QP  ++ +G T  KF+  +   + R + + 
Sbjct: 1077 KLEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVR 1136

Query: 1139 ALFERL 1144
               ++L
Sbjct: 1137 QFMQQL 1142