Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  608 bits (1568), Expect = e-178
 Identities = 376/1060 (35%), Positives = 586/1060 (55%), Gaps = 91/1060 (8%)

Query: 42   LLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPEL 101
            L++  D + A  L  +LS     +    FP     PY     H+++ +   A++    E+
Sbjct: 57   LIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKRPYQ----HEEVDN---ANVLMRAEI 109

Query: 102  AHGVL--------VVPITTALH-RLAPTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRC 152
             + VL        +V    AL+ ++   K L  ++    +G+K+DVE +   L    +  
Sbjct: 110  LNKVLSSDTKMEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDVEFITELLSTYDFEK 169

Query: 153  VDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQRSIDKVDSIKLL 212
             D VYE G+FA+RG +ID+F   ++ PYRI+LF  EIE++RTFD E+Q S + +D I ++
Sbjct: 170  TDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIESIRTFDTESQLSEESLDHISII 229

Query: 213  PAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLF 272
            P        +  T+     R+ F                                     
Sbjct: 230  P--------NVQTKLMQEVRQSFT------------------------------------ 245

Query: 273  DYLPQDTQVF--SLPGIEQAAENFWNDVRNRYEE--RRVDPSRPLLPPAELFLPVEDCFA 328
            D+LP+DT V+   +       +N +   R ++++   +    + +L P  LF   +D  A
Sbjct: 246  DFLPKDTCVWIKDVQFTMDMLDNAFEKARQQFDKIVDQTGSKQLVLQPENLF---DDGAA 302

Query: 329  RLKNWPRVVASQQDVDAGSGRERFPAGTLPDLAIQAKATQPLEALSNFLGDFPGRVLFTA 388
             L +  R+      ++ G+ +   P   + D  I+ + +       NF  D     L   
Sbjct: 303  FLSSLDRLTK----IEFGN-QYHLPTSKVFDFDIKPQPSFN----KNF--DLLVENLVDN 351

Query: 389  ESAGRREVLLELLERLKLRPKTVDSWPDFVKSKERLAITIAPLDEGLLLDDPALALIAES 448
            E  G   ++    E+   R + +    D     + L ++I    EG +     +A   + 
Sbjct: 352  ERKGLLNIICSESEKQVERLQNIFQELDPTLKIQSLPVSIR---EGFVDHSTMIACYTDH 408

Query: 449  PLFGQRVMQRRRREKRADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAA 508
             +F +    R +  K+A       +K L  L+ G  VVH+D+GVGR+ GL+ +E+++   
Sbjct: 409  QIFER--YHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNDNFQ 466

Query: 509  EFLTMEYAEGAKLYVPVASLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAA 568
            E + + + +   LYV + SLH I++Y+G +  L  + +LGS  W+  K+K   +V+D+A 
Sbjct: 467  EAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDIAK 526

Query: 569  ELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLV 628
            +L+ +YA+R    G+ +A          + F FE+TPDQ      V+ADM  P PMDRLV
Sbjct: 527  DLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDRLV 586

Query: 629  CGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRF 688
            CGDVGFGKTEVA+RAAF A++  KQVA+LVPTT+LA QHY +F++R   +PV V+ ++RF
Sbjct: 587  CGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRF 646

Query: 689  KSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALR 748
            ++ K+V      +  G+IDI++GTH++++ DV+ K+LGL+IIDEE +FGV+ K+QLK LR
Sbjct: 647  RTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKELR 706

Query: 749  SEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLREL 808
              VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T +    +  +++A+ REL
Sbjct: 707  VNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSREL 766

Query: 809  LRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLI 868
             RGGQV+++HN V  I+  A  +  LVP+A+IA  HGQM  + LE++M  F    F+VL+
Sbjct: 767  QRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDVLV 826

Query: 869  ASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDA 928
            ++ IIE+G+D+P+ANTIII RA  FGL+ LHQ+RGRVGRS+ +AY YLLT P   +T++A
Sbjct: 827  STNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEA 886

Query: 929  EKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAI 988
             KRL+ +    DLG GF +A  DL+IRGAG LLG  QSG I  +GF +Y ++L+ AV+ +
Sbjct: 887  RKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQEL 946

Query: 989  RKGEQPNLDQ--------PLGGGPEINLRLPALIPEDYLPDVHARLILYKRIASATDEEG 1040
            ++ E  +L +         L     I   +  LIPEDY+ ++  RL LY ++ +   EE 
Sbjct: 947  KENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKTEEA 1006

Query: 1041 LKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV 1080
            L      + DRFG +P   ++L+    L+  AE LG +K+
Sbjct: 1007 LTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046