Pairwise Alignments

Query, 339 a.a., flagellar motor protein MotB from Pseudomonas fluorescens SBW25

Subject, 309 a.a., Flagellar motor rotation protein MotB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  225 bits (573), Expect = 1e-63
 Identities = 127/312 (40%), Positives = 189/312 (60%), Gaps = 21/312 (6%)

Query: 6   PIII---KRVKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYFKD 62
           PI++   +R K    G HG +WKIA+ADF TAMMAFFLV+WL+S ++P++ I IA YF+ 
Sbjct: 7   PIVVVKRRRHKPHGGGAHG-SWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFR- 64

Query: 63  PIGFSESGTPFVIDLGGSPQLAPERTINPEVKTEAPQEKIPIERD-TVEAMAEQVEQERL 121
                   TP    + G  ++A   +  P    +  Q++  +E+   ++ + +++EQ RL
Sbjct: 65  --------TPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRL 116

Query: 122 ELLLQELQTKVEENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFEDI 181
             L  +L   +E +P+L   +  +  ++  +GLRIQI D+ NRPMF +GSA ++PY  DI
Sbjct: 117 NKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDI 176

Query: 182 LLAMADTIKAVPNKISISGHTDAKPYA-GQGDFGNWELSANRANAARRALVAGSYPDPQV 240
           L A+A  +  +PN+IS++GHTD  PYA G+  + NWELSA+RANA+RR LVAG   + +V
Sbjct: 177 LRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKV 236

Query: 241 ARVVGFASSQLFDHKDPFNPINRRIDIVVLTKKAQRAI-----EGDQQPAPP-PTPGAGA 294
            RVVG A++     + P + INRRI ++VL K+A++AI     E   +P      P A  
Sbjct: 237 LRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILHENAESQNEPVSVLQQPAAAP 296

Query: 295 PGEVPTDPNAIP 306
           P  VPT P A P
Sbjct: 297 PASVPTSPKAEP 308