Pairwise Alignments

Query, 925 a.a., DNA polymerase I from Pseudomonas fluorescens SBW25

Subject, 928 a.a., DNA polymerase I (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1036 bits (2679), Expect = 0.0
 Identities = 544/931 (58%), Positives = 681/931 (73%), Gaps = 20/931 (2%)

Query: 5   PLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAKGG 64
           PL+LVDGSSYLYRA+HA PPLT S G PTGA+ GVLNML+SL  QY  +  AVVFDAKG 
Sbjct: 8   PLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAKGK 67

Query: 65  TFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSSAA 124
           TFRD+++  YK++RP MPDD+R QIEPLH  V A+G PLL V GVEADDVIGTLAR +  
Sbjct: 68  TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127

Query: 125 ADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALMGDSS 184
             RPV+ISTGDKDMAQLV  +ITL+NTMT + +  + V  K+GV PE IID+LALMGDSS
Sbjct: 128 VGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMGDSS 187

Query: 185 DNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEMAFLS 244
           DNIPGVPG+G KTA  LL G+ GGL  LY + + +  L  RGAKT+  KL ++K++A+LS
Sbjct: 188 DNIPGVPGVGEKTAQALLQGL-GGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAYLS 246

Query: 245 YQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQR----DAKRVELKA 300
           Y+LATIK DV L++  + L + +P  ++LL L+   EFK W  +++      AK  +  A
Sbjct: 247 YKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAKGAKPAA 306

Query: 301 AP-----VVEDVAEVAAPAE-ATYTTILDQATFDIWLKKLNDAKLFAFDTETTGIDAQQA 354
            P     + E  +E AA      Y TILD  T + W++KL  A +FAFDTET  +D   A
Sbjct: 307 KPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAA 366

Query: 355 QLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMN 414
            LVG+SFA++P  AAY+P+ H Y+ AP+Q+ R   L  LKPLLED    KVGQ+ K+D  
Sbjct: 367 NLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRG 426

Query: 415 ILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQDIAG 474
           +L N        +GI +RGIAFDTMLESY+LN+ A RHDMDSL+ ++L + T+ F+DIAG
Sbjct: 427 VLQN--------YGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAG 478

Query: 475 KGAKQLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLA 534
           KG  QLTF+QIALE+AG YAAEDADVTL+LH  ++ +L       +V  +IE+PLVPVL+
Sbjct: 479 KGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLS 538

Query: 535 RIERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPV 594
           R+ER G  +D  +L   S E+  ++ ELE++A +IAGE FNL S KQL  IL+EK G+  
Sbjct: 539 RVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKP 598

Query: 595 LKKTGKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHT 654
           LKKT  G  ST+EEVL +LA D YPLPKV+++YR ++KLKSTYTD+LP  INP+TGR+HT
Sbjct: 599 LKKTPGGAPSTSEEVLEELALD-YPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 655 SYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHL 714
           SYHQAV ATGRLSS+DPNLQNIPVR  EGRRIRQAFIAP+ Y +++ADYSQIELRIMAHL
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 715 SKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDI 774
           S+D+GL+ AF    D+H ATAAEVF + L  VT +QRRSAKAINFGLIYGM A  L + +
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQL 777

Query: 775 GVDTKTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERA 834
            +  K A+ Y+D+YF RYPGV EYMERTRAQA +QGYVET  GRRLYLPDI S+    RA
Sbjct: 778 NIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRA 837

Query: 835 AAERTAINAPMQGTAADIIKKAMVLVDNWLTDSGLDAKVILQVHDELVLEVREDLVAEVS 894
            AER AINAPMQGTAADIIK+AM+ VD WL       ++I+QVHDELV EV +D +  V+
Sbjct: 838 GAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVA 897

Query: 895 EKIREYMSAAAQLDVPLLVEVGVGDNWDQAH 925
           ++I + M    ++DVPLLVEVG G+NWDQAH
Sbjct: 898 KRIHQLMENCTRIDVPLLVEVGSGENWDQAH 928