Pairwise Alignments

Query, 391 a.a., efflux RND transporter periplasmic adaptor subunit from Paraburkholderia sabiae LMG 24235

Subject, 408 a.a., RND efflux system, membrane fusion protein CmeA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  255 bits (652), Expect = 1e-72
 Identities = 151/384 (39%), Positives = 223/384 (58%), Gaps = 10/384 (2%)

Query: 7   RLSVAVSAVAVLGAAAGAGLVRGVGPGAVADARAADAPA---PAVEVDVATVLSRTVTDW 63
           R +  +  +A + AA G G++   G        A   PA   P   V VA  LSRT+   
Sbjct: 2   RRTFKIMLIAGVIAAIG-GVIYMAGEALWDKDNAVGPPASAPPPPSVPVAKALSRTLAPT 60

Query: 64  QSYSGRLEAVDHVDVRPLVSGTIVAIHFTDGALVKKGEPLFSIDPRPYQAEVDRAAAQVA 123
             ++G L A + V++R  V GT+ AI   +G LV +G+ LF IDPRP++  +D A AQ+ 
Sbjct: 61  AEFTGFLAAPETVELRSRVGGTLDAISVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLR 120

Query: 124 AAKARALYTSTDAARAERLLVDNAIAKRDYDEKQNAAREASAAVKAADAAFEAAQVSLGY 183
            A+  A     D  R +RL+   A+++++ D+         A +++A AA  AA++ L +
Sbjct: 121 QAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSAKAAVAAARLELSW 180

Query: 184 TTITAPVSGRVSRAELTVGNVVSAG--ANAPLLTTLVSVSPIYASFDVDEQTYLRYLGRD 241
           T ITAP++GRV R  +T GN+VS G   NA LLTT+VS +P+Y  FD+DE T+L+ L   
Sbjct: 181 TRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHT 240

Query: 242 RQAKVP--VALGLANEDGYSRKGTISSVDNRLDTQSATIRVRATIDNRDGALVPGLYARV 299
           R  K P  V +GL  ++G   +G +  + N+++  + TIR RA I + DG L PGL+AR+
Sbjct: 241 RSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARI 300

Query: 300 KVGGGDAHPAVLIDDAAIGTDQSKKYVLVVNDVNKVQYREVQLGALHDNLRVIDAGLKPG 359
            +  G+    VLIDD A+  DQ K YVL+V   N+V+YR V+LG + D  RV+  G+ PG
Sbjct: 301 SLPIGEPRETVLIDDLAVSADQGKNYVLIVGKENQVEYRPVELGQMVDGFRVVTQGVLPG 360

Query: 360 ERIVVNGLMRARPNDTVKPHPVDM 383
           E+I++ GL+  RP  TV P  V M
Sbjct: 361 EKIILKGLV--RPGMTVAPRLVPM 382