Pairwise Alignments

Query, 314 a.a., substrate-binding domain-containing protein from Paraburkholderia sabiae LMG 24235

Subject, 296 a.a., D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor from Escherichia coli BL21

 Score =  159 bits (403), Expect = 6e-44
 Identities = 106/297 (35%), Positives = 175/297 (58%), Gaps = 16/297 (5%)

Query: 8   RRVLTIV-ATATVATYSLCAMADDKIVIGFSQSTLNHPWRIAQTEGNKKYAASHYPDVKL 66
           +++ T+V A A  AT S  AMA D I +  S  TLN+P+ ++  +G +K A        L
Sbjct: 4   KKLATLVSAVALSATVSANAMAKDTIALVVS--TLNNPFFVSLKDGAQKEADKL--GYNL 59

Query: 67  IVTDGQNNATRQTADVESLMAQGVKVLMISPLTQQALTPVVKQAMDHGIKVVTLDRRVNT 126
           +V D QNN  ++ A+V+ L  +G K+L+I+P    A+   VK A    I V+TLDR+   
Sbjct: 60  VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK 119

Query: 127 -PVTVHVGPEDLPIGRQAGELIAKKLNGQGAIIEIGGTAGASVSIDRDKGFREAIAKYPG 185
             V  H+  +++  G+ AG+ IAKK      +IE+ G AG S + +R +GF++A+A +  
Sbjct: 120 GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK- 178

Query: 186 LRIVAFQNCDFLREQSMKFMEDQIQRFKPGEIKAVYAHDDEMALGAIQALEAAGRLNGII 245
             ++A Q  DF R + +  M++ +      +++AV+A +DEMALGA++AL+ AG+ + ++
Sbjct: 179 FNVLASQPADFDRTKGLNVMQNLLTAHP--DVQAVFAQNDEMALGALRALQTAGK-SDVM 235

Query: 246 VVGINGANNAIQSVAEGKLTATF--IYPFVAPEGIQTAYKVARGEPV----PKDIKL 296
           VVG +G  +  ++V +GKL AT   +   +  +G++TA KV +GE V    P D+KL
Sbjct: 236 VVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292