Pairwise Alignments

Query, 207 a.a., RNA polymerase factor sigma-70 from Paraburkholderia sabiae LMG 24235

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score =  120 bits (301), Expect = 1e-32
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 1/161 (0%)

Query: 16  CEGLLLDVLIENRRSLIQLARSFVGCSSRAEDVVHDVFIKLTGFPN-QDDVRQPLAYVAR 74
           C+  LL   ++NR  L+++A    GC SRAEDVV D F +L+  P      +  L+Y+ +
Sbjct: 10  CDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQ 69

Query: 75  MVRNASIDACRRQSLENTWHTCEEDGLEVPSPEPTPESALMTRDSLRHAFDALAQLPERT 134
           +VRN +ID  R+Q++E  +   EE+G+ V     +PE+  + R +L    +AL +LP RT
Sbjct: 70  IVRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRT 129

Query: 135 RSAFERVRLREETLQETARALNVSQTLVHFMVRDAAKHCEE 175
           R AFE  RL     ++ A+ L VS TLV+FM+RDA  HC +
Sbjct: 130 RYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170