Pairwise Alignments

Query, 1570 a.a., RHS repeat-associated core domain-containing protein from Paraburkholderia sabiae LMG 24235

Subject, 1377 a.a., rhsA element core protein RshA (NCBI) from Escherichia coli BW25113

 Score =  350 bits (898), Expect = e-100
 Identities = 361/1249 (28%), Positives = 501/1249 (40%), Gaps = 220/1249 (17%)

Query: 350  GPNCKSCSAGRSAGS-IGYALGDERFEHE-DFMLPGAMPIIWQRTYRSFLDAYDH--GEL 405
            G  C  C  G ++G  +   LG +    E D  LPG +P I  RTY S+        G L
Sbjct: 33   GVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSL 92

Query: 406  GARWITPYTTRFDIHAAKLVYHDPSGRSIDYPLLKAGDTHDDLGEGVTL-----AQLDEQ 460
            G  W  P   R  +    L+  D  GRS+ +  L  G+      E + L     A+LDE 
Sbjct: 93   GPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEG 152

Query: 461  ------WLTVTRG-----HELMEAYEKHGDAFRLGFIK---------------------- 487
                  W  +        H  +      G  + LG+ +                      
Sbjct: 153  HRLAALWQALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGL 212

Query: 488  -DRSGNQITFDYTKDHHLSRLIAAQGVIAFSH------DSAGRIVEAAHYDNEGERV--- 537
             DR G   TF        S  I      A+ H        A R  EA      G      
Sbjct: 213  VDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLTTQAQRAEEARQQAISGGTEPSA 272

Query: 538  --GTLATYT-YDREGDLVAAADRYGNRREYAY---AHHLVTRYTDRTGRGMNLEWDGTGP 591
               TL  YT Y R+  +  +A    +  EY     A  LV RY       + + +D +G 
Sbjct: 273  FPDTLPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLV-RYGWTPRGELAVVYDRSGK 331

Query: 592  KARCVHEYADDGTNETRLAWH-----PEIRLVYVTDGLGSMTRHYYDIDGYTY-----RI 641
            + R    +  D     R+  H     PEIR  Y +DG  +   +   +  YTY     RI
Sbjct: 332  QVR---SFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLS-YTYQYEKDRI 387

Query: 642  VHPDA--REEWFYRDAN---HHVTQRIYPDGTVARFAYDARGNLVEQV------------ 684
               D+  R E  +         V ++ + DG+V +  +DA G L  Q             
Sbjct: 388  TITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPD 447

Query: 685  ----------RPDGSVVRMEYDAKDQMTTIVDPQGFRWEREYDDKGNVVAQIDPLGRETK 734
                       PDG      Y+  +Q+T+   P G    REYD+ G ++ +  P G  T+
Sbjct: 448  VVTGLITRITTPDGRASAFYYNHHNQLTSATGPDGLELRREYDELGRLIQETAPDGDITR 507

Query: 735  YTYNG--AGLPTQITDAKGGAKTLAYDANGQLTSYTDCSGKTTQWTYDAHGRLLEATDAA 792
            Y Y+   + LP    DA G  KT+ +   GQL S+TDCSG  T++ +D  G++       
Sbjct: 508  YRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREE 567

Query: 793  GHSTVYRYGANGQLSAVVKPSGIELM-EHDGEGRLTEHADPSRATTRYGYDAAGRIAYRT 851
            G S    Y + GQL AV    G E   E++  G LT    P  +     YDA G+ A RT
Sbjct: 568  GLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLTAVIAPDGSRNGTQYDAWGK-AVRT 626

Query: 852  DALGQTLAYRYDRLGRLSTL--EDANHATYRLFYDPVSRLTAEIGFDGKETRYEYDAASS 909
               G T +  YD  GR+  L  E+ +H T+R  YD + RL  E GFDG+  RY +D  + 
Sbjct: 627  TQGGLTRSMEYDAAGRVIRLTSENGSHTTFR--YDVLDRLIQETGFDGRTQRYHHDL-TG 683

Query: 910  KLIAIDEAGAVTHLEYDRAGRLARRVAGGDE-ESFAYDAGGRLAE----ARNAHCRVQHF 964
            KLI  ++ G VTH  YD A RL  R   G+  E + YD  G L +    +      V + 
Sbjct: 684  KLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDERGWLTDISHISEGHRVAVHYR 743

Query: 965  YDAVGNLIREHHAYELFGAKRSYVWRHEYDEI-DARVRTQR--PDG-HTVDWLTYGAGHV 1020
            YD  G L  E           + +W+HE     +A+    R  PD    V+WLTYG+G++
Sbjct: 744  YDEKGRLTGERQTVH-HPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGYL 802

Query: 1021 HGMMLDGRELVQFERDDLHREIQRNFASQLEQRTKYDAAGRIVEQRLARASAPGHVAERR 1080
             GM L    LV++ RD LHRE  R+F  + E  T Y  AG++  Q L        +++R 
Sbjct: 803  AGMKLGDTPLVEYTRDRLHRETLRSFG-RYELTTAYTPAGQLQSQHLNSL-----LSDRD 856

Query: 1081 YGYDPAGQLTHIDDSRQGPTTYRYDPVGRLLEALSPMA----KEQFAFDPASNIGYPHAG 1136
            Y ++  G+L  I   RQ   +Y Y   GRL    +  A    +  +A DPA N       
Sbjct: 857  YTWNDNGELIRISSPRQ-TRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGN----RLP 911

Query: 1137 TTTSSASSTLSTQIPKTLGNLLQDYAGTHFDYDARGNL----------IGRRSPGSAQRY 1186
                   STLS        N +   A   + YD  G L          + R       RY
Sbjct: 912  DPELHPDSTLSMWPD----NRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRY 967

Query: 1187 EWDGFNRLIG---ARVDEPAASREARYFYDPFGRRIARQVDRVQ---------------T 1228
             +D  +RL+     + +EP    E+RY YDP GRR+A++V R +               T
Sbjct: 968  HYDSQHRLVHYTRTQYEEPLV--ESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVT 1025

Query: 1229 IFGWDGDTLAFESSGAHSIHFVYEAGSFTPLAQYAGTAVE-------------------- 1268
             +GWDGD L    +    I  +Y+ GSFTPL +      E                    
Sbjct: 1026 WYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQSGGED 1085

Query: 1269 --------------------------GIETPQWKSTDRYAPEDDPLMQPPAANAPASALF 1302
                                        E+ +W ++     E       P          
Sbjct: 1086 GGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHL 1145

Query: 1303 YHCDQIGTPLMMTDERGDIVWEARYKAWGETIAVDARASHITHVPPQNPIRFQGQQFDDE 1362
            YHCD  G PL +  + G   W A Y  WG  +  +    H      Q  IR  GQQ+D+E
Sbjct: 1146 YHCDHRGLPLALISKEGTTEWCAEYDEWGNLL--NEENPH----QLQQLIRLPGQQYDEE 1199

Query: 1363 TGLAYNRYRYYDPRTGRYISQEPIGLLGNTNPYQYAPNPTDWIDPRGLK 1411
            +GL YNR+RYYDP  GRYI+Q+PIGL G  N YQY  NP    DP GL+
Sbjct: 1200 SGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVTNTDPLGLE 1248