Pairwise Alignments

Query, 565 a.a., DEAD/DEAH box helicase from Paraburkholderia sabiae LMG 24235

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  347 bits (891), Expect = e-100
 Identities = 237/601 (39%), Positives = 302/601 (50%), Gaps = 92/601 (15%)

Query: 37  TFAELGLSAEIVSALTAAGYKNPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
           +FA LGLS  +V A+ AAGY  PTPVQQRAIPA + GRDL+V++ TG+GKT  F LP +E
Sbjct: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query: 97  RFAQLQKAQTSQPREPRESNAAGARGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
           R         SQ   PR+                P +LVLTPTRELA QV  +   Y + 
Sbjct: 62  RLFPAGHPDKSQRHGPRQ----------------PRVLVLTPTRELAAQVHDSFKVYARD 105

Query: 157 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSQLQMLVLDEADR 216
           L  L +  I GGV    Q+  +AK  ++LVA PGRLLD   +G++DL+ +++LVLDEADR
Sbjct: 106 LP-LVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADR 164

Query: 217 MLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIKQHIEQRTNI 276
           MLDMGFI D++ ++A  PA RQ +LFSAT    I  L  +LL +PERIE+         I
Sbjct: 165 MLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERI 224

Query: 277 AQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 336
            Q V+ +    HK  LL HL+     +Q +VFT TK  A++LA  L   G  +AA+HG+ 
Sbjct: 225 EQRVYRLP-ASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNK 283

Query: 337 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 396
            Q AR + +   +   VRVLVATD+AARG+DI  + HV N++LP   EDYVHRIGRTGRA
Sbjct: 284 SQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRA 343

Query: 397 GRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVVEGF----------EPRKSPPANGRGG 446
           GRSG A+SLV   E+  LK IER  +  +    + GF          E R+ P  NGRGG
Sbjct: 344 GRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGG 403

Query: 447 FG--GRGRPGGGNGGGRRFGG---------------------------KPGYGGSR---- 473
                RG  G    GGR+  G                           KP    SR    
Sbjct: 404 RNQQARGEGGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQA 463

Query: 474 ------------------DGNGGGYGSRDGNRGGY-GARDGGNGGNGGNSAGRSWGD--- 511
                             D     +G+R      Y G   G N   GG   G+  G+   
Sbjct: 464 SNNSVPKPPADRDPEEFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQR 523

Query: 512 KPAGGNREGGYNSGSREGGYRSEGYRGNREGGYSRDGGYG---------ARRNDGPRNSR 562
             AGG  +       R GG      R N  GG  RDGG G         AR+    RN R
Sbjct: 524 SNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQEPAVRNPR 583

Query: 563 R 563
           +
Sbjct: 584 Q 584