Pairwise Alignments

Query, 565 a.a., DEAD/DEAH box helicase from Paraburkholderia sabiae LMG 24235

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  361 bits (926), Expect = e-104
 Identities = 232/556 (41%), Positives = 295/556 (53%), Gaps = 72/556 (12%)

Query: 37  TFAELGLSAEIVSALTAAGYKNPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
           TF +L L+  IV A+   GY+ PTP+Q  AIPA +AGRDLL  + TG+GKTAAF LP + 
Sbjct: 16  TFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPMLH 75

Query: 97  RFAQLQKAQTSQPREPRESNAAGARGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
           R A  ++A++            G R            LVLTPTRELA QV  +   YGKH
Sbjct: 76  RLANSERAKS-------RFGGVGIRA-----------LVLTPTRELAAQVEESVRVYGKH 117

Query: 157 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSQLQMLVLDEADR 216
           L    TV + GGV    Q+  + +  +ILVATPGRLLD  ++G +DLS +QMLVLDEADR
Sbjct: 118 LSLTSTV-VFGGVGMNPQINAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADR 176

Query: 217 MLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIKQHIEQRTNI 276
           MLDMGFI D++ I+A  P  +Q++LFSAT   +I  L   LLKDP  I++         I
Sbjct: 177 MLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRI 236

Query: 277 AQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 336
            Q +H V  R  K  LL H++      Q +VFT TK  A+ +A  L   G  + ALHG+ 
Sbjct: 237 TQVIHPVG-RGKKKALLVHIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNK 295

Query: 337 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 396
            QGAR + +   +   +R LVATD+AARGIDI  + HV NY++P  +EDYVHRIGRTGRA
Sbjct: 296 SQGARTQALAGFKSGEIRALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRA 355

Query: 397 GRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP----RKSPPANGRGG-FGGRG 451
           G SG AV+LV   E+G +  IERF +  +PV +   F P    +  P A GR   +GG G
Sbjct: 356 GNSGEAVNLVSLDEEGFMMEIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAG 415

Query: 452 RP------------------------------GGGNGGGRRFGGKPGYGGSRDGNGGGYG 481
           +P                              G GNGGG     +P   GS+     G G
Sbjct: 416 KPPSREVMAAAAKAARTEMLQRVREKKANEPQGRGNGGGGGQRQRPAGDGSQADGPRGEG 475

Query: 482 SRDGNRGGYGARDGGNGGNGGNSAGRSWGDKPAGGNREGGYNSGSR----EGGYRSE-GY 536
            R GN GG  A   G GGNG              G R GG   G R    + G+R + G 
Sbjct: 476 RR-GNGGGQRANGNGGGGNGQRQ-----------GQRHGGGQQGQRPPREDRGFREDRGP 523

Query: 537 RGNREGGYSRDGGYGA 552
           R  RE G  R  G  A
Sbjct: 524 REEREPGAERQPGPNA 539