Pairwise Alignments

Query, 446 a.a., ribosome biogenesis GTPase Der from Paraburkholderia sabiae LMG 24235

Subject, 490 a.a., putative GTP-binding factor (VIMSS) from Escherichia coli BW25113

 Score =  468 bits (1205), Expect = e-136
 Identities = 241/469 (51%), Positives = 323/469 (68%), Gaps = 26/469 (5%)

Query: 1   MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLVVDTGG 60
           M PV+ALVGRPNVGKSTLFNRLTR+RDALVAD PGLTRDR YG   + G R ++ +DTGG
Sbjct: 1   MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEG-REFICIDTGG 59

Query: 61  FEPVAKDGILFEMARQTRQAVEESDVIVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVN 120
            +   +DG+   MA Q+  A+EE+DV++F+VD R GL P D++IA +LR   +P FLV N
Sbjct: 60  IDGT-EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVAN 118

Query: 121 KAEGMKYTNVAADFYELGLGDPRAISAAHGDGVTEMINEAL---------------DVAY 165
           K +G+       DFY LGLG+   I+A+HG GV  ++   L               D  Y
Sbjct: 119 KTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEY 178

Query: 166 AGQ--PEESEEEKAQHG-------IKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTR 216
             Q   EE+ EE+ +         IK+AIVGRPNVGKSTL N ++GE+RV+ +DMPGTTR
Sbjct: 179 WAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTR 238

Query: 217 DSIYVDFERQGKKYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDI 276
           DSIY+  ER G++Y LIDTAG+RKRGK+ +A+EKFSV+KTLQ+I DANVV+L++DAR+ I
Sbjct: 239 DSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGI 298

Query: 277 SEQDAHIAGFVVEQGRALVVGVNKWDGLDPHVRERTKNDLQRKLKFLEFAKFHFISAAEK 336
           S+QD  + GF++  GR+LV+ VNKWDGL   V+E+ K  L  +L F++FA+ HFISA   
Sbjct: 299 SDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHG 358

Query: 337 TGIGPLMRSVEDAYKAAMSKLPTPKLTRALIDAVEFQQPRRRGPVRPKLRYAHQGGQNPP 396
           +G+G L  SV +AY ++  ++ T  LTR +  AVE  QP      R KL+YAH GG NPP
Sbjct: 359 SGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPP 418

Query: 397 IIVIHGNALDAITDTYRRYLENRFRETFALTGTPLRIEFRSSTNPYADK 445
           I+VIHGN +  + D+Y+RYL N FR++  + G+P+RI+F+   NPYA+K
Sbjct: 419 IVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467