Pairwise Alignments

Query, 464 a.a., sigma-54 dependent transcriptional regulator from Paraburkholderia sabiae LMG 24235

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  349 bits (896), Expect = e-101
 Identities = 204/447 (45%), Positives = 279/447 (62%), Gaps = 15/447 (3%)

Query: 3   SATRQLIYVSR-DPSAELNTRFHERGWHVE--VVGSARDARRAVRSGMAAGGLLDLSSCF 59
           +A R+L+ V   D    L       GW V+  ++G+A D    V       GLL L +  
Sbjct: 5   AAQRRLLIVDPCDDCHRLLPGLRNAGWDVDSCMLGAALDHTCDV-------GLLRLQASH 57

Query: 60  QQHEIAAFESCLTMPNVGWVATTMAGQLQDAALRRLVRDYCFDYVTVPYSGDRIVDSVGH 119
            +H  A  +  +   N  W+A   A QL+  A    V ++ FD+ T+P+   R+  ++G 
Sbjct: 58  LRHPDAV-KDMIKRSNTEWIAVLSADQLRMPAFGDFVCEWFFDFHTLPFDVSRVQVTLGR 116

Query: 120 AYGMVSLGEPASNDASQGGSEGEMVGSCDAMLALFRSIRKVAMTDAPVFISGESGTGKEL 179
           A+GM  L    +    +  +  E++G    +  L + + K+A T++PV I GESGTGKEL
Sbjct: 117 AFGMARLRGKGAVKVDE--ATHELLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKEL 174

Query: 180 TAVAIHERSSRRNAPFIPINCGAIPPHLLQSELFGYERGAFTGANQRKIGRVEAANGGTL 239
            A  +H +S R   PFI INCGAIP HL+QSELFG+E+GAFTGA+QRK GR+EAA+GGTL
Sbjct: 175 VARTLHRQSQRSEQPFIAINCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTL 234

Query: 240 FLDEIGDLPLESQASLLRFLQERKVERLGGHGSIEVDVRIISATHVDMNTAMIEGRFRSD 299
           FLDEIGDLPLE QA+LLRFLQE+ +ER+GG   I VDVR+++ATHVD+  A+ +GRFR D
Sbjct: 235 FLDEIGDLPLELQANLLRFLQEKHIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFRED 294

Query: 300 LYHRLCVLQIDEPPLRARGKDIELLARHMLERFRKDASRRLRGFAPDAIAALHNYSWPGN 359
           LY+RL VLQ+   PLR R  D+ +LA H    +  +  RR R F+  A+AA+  + WPGN
Sbjct: 295 LYYRLNVLQVVTAPLRDRHGDLSMLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGN 354

Query: 360 VRELINRVRRAIVMSEGRAITARD--LELAEYVEIVPVSLAQAREAAERQAIELALLRHR 417
           VREL NRVRR +V++EGR I A+D  L+L +  +    +L + ++ AERQA+   L RH 
Sbjct: 355 VRELANRVRRGLVLAEGRQIEAQDLGLQLLDPEQQPLGTLEEYKQRAERQALCDVLNRHS 414

Query: 418 GRLGDAAQELGISRVTLYRLLCSHGMR 444
             L  AA+ LGISR T YRLL  H +R
Sbjct: 415 DNLSVAAKVLGISRPTFYRLLHKHQIR 441