Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 60.1 bits (144), Expect = 2e-14
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 10  DEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTF 69
           D E  +  C  G +   R LY+  S  ++ V +R A     AEDI+ DAF+K++    +F
Sbjct: 3   DYEACLQACARGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSF 62

Query: 70  KRD-CPVEFWIRRIMINTALKHLRSK-QLLTVSHESEEVANLSADDVNLSGYSLDELLSM 127
                    W+  +  + AL  +R++ + + +S E E+VA  + D    +  S  ++ + 
Sbjct: 63  DPSRGSARGWVFSVTRHLALNFVRNQYREVPLSDEHEQVA--ATDTFEFTARS-GQVHTC 119

Query: 128 IQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNML 178
           ++ L P  R       ++GY+H EI + L    GT K+   R+   L+  +
Sbjct: 120 LEQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170