Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 8   KSDEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQ 67
           + ++++L++    G +    LL   Y  K++ + +R+   T EA+D+ Q+AF+K +  L 
Sbjct: 4   QEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63

Query: 68  TFKRDCPVEFWIRRIMINTALKHLRSK-QLLTVSHESEEVANLSADDVNLSGYSLDELLS 126
            F+ D     W+ RI INTA  +L S+ +    S  S E A     D  L      E   
Sbjct: 64  NFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERAL 123

Query: 127 M-----------IQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQ 175
           +           IQ L    R    L   +G ++++I  ++    GT +S+  RAR  + 
Sbjct: 124 LRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183

Query: 176 NML 178
             L
Sbjct: 184 KAL 186