Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 190 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 10  DEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTF 69
           D +  +  C  G R   + LY   S+ +M V LR      +AED++ DAF+ ++   +TF
Sbjct: 11  DYDAALMACARGDRQALQQLYQRESRYLMGVALRIVRQRQQAEDVLHDAFISIWQRAETF 70

Query: 70  K-RDCPVEFWIRRIMINTALKHLRS--KQLLTVSHESEEVANLSADDVNLSGYS------ 120
                    WI  ++ N AL  +RS  +Q+      SE+ A    D   L+ Y+      
Sbjct: 71  NPARGEGRGWIYSVVRNAALNMVRSGARQV----DVSEDAAEAIDDQAALAAYASAADPF 126

Query: 121 -----LDELLSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQ 175
                L  L   +  L P  R       +EG +H EI E L    GT K+   R    L+
Sbjct: 127 ELRADLGRLEGCLGGLEPARRDCILYAYVEGCSHGEIAERLQTPLGTVKAWIQRGMRALR 186

Query: 176 NML 178
             +
Sbjct: 187 ECM 189