Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)

Query: 6   KPKSDEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNN 65
           +P   + +L+   +AG +    LL   Y +++  +  R        EDI Q+ F++ +  
Sbjct: 24  RPGEVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYRA 83

Query: 66  LQTFKRDCPVEFWIRRIMINTALKHL--------RSKQLLTVSHESEEVA-----NLSAD 112
           L  F+ +     W+ RI +NTA K L         S+  L  S E E+         + D
Sbjct: 84  LHQFRGEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTTD 143

Query: 113 DVNLSGYSLDELL----SMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYS 168
           +   S  + +E+     + +++L    R    L  IEG +++EI E++    GT +S+  
Sbjct: 144 ETPESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRIF 203

Query: 169 RAR 171
           RAR
Sbjct: 204 RAR 206