Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 197 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

 Score = 50.1 bits (118), Expect = 3e-11
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)

Query: 7   PKSDEEKLIDGCIAGKRDMQ--RLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFN 64
           P ++   LID    G RD    RLLYD  S K+M + +R       AED++Q+AF+ V+ 
Sbjct: 12  PDAELMALIDRI--GHRDEAALRLLYDRTSPKLMGLAMRVVRQREWAEDVLQEAFLTVWR 69

Query: 65  NLQTFKRD-CPVEFWIRRIMINTALKHLRSK------------QLLTVSHESEEVANLSA 111
               ++    P   W+  I+ + AL  LR +            +L+  + ES+       
Sbjct: 70  VAGDYRSSLSPPLAWLGLIVRSRALDLLRRRTADRAQLTQEFDELMADTLESDAPNPADT 129

Query: 112 DDVNLSGYSLDELLSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSR 169
            D +   ++L + LS ++    R R V +L  +   +H E+ + L +  GT K+   R
Sbjct: 130 ADASEQAWALHQCLSQLEG---RQREVVSLAYLREMSHGELADQLKLPLGTVKTWIRR 184