Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 177 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 11  EEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTF- 69
           E++LI G  A  +     LY+ YS+ +  V  R       AE++  DAFVK+   + ++ 
Sbjct: 3   EDQLITGLRAKDKRTVDYLYEKYSRALFVVISRVIKDHDIAEEVFHDAFVKIIRRIDSYD 62

Query: 70  KRDCPVEFWIRRIMINTALKHLRSKQLL------TVSHESEEVANLSADDVNLSGYSLDE 123
           +    +  W+  +  N A+   RSK+        T+ +    +   S     + G  + E
Sbjct: 63  ESKGRLYTWMANVCRNAAIDKTRSKEFSKDSKTNTIDNYVYGLEGTSGTTEAVDGIGVKE 122

Query: 124 LLSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNMLLR 180
           L   I +L    R V      +GY H EI E   I  GT KS+   A  +L+  + R
Sbjct: 123 L---ITNLNEEQRFVVECIYFKGYTHSEISEEFEIPLGTVKSRIRAALGVLKKNINR 176