Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 189 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  133 bits (335), Expect = 2e-36
 Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 2/186 (1%)

Query: 6   KPKSDEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNN 65
           K  + E  +I GC+ G R+ Q+ LYD YS K + +C RY      AED+M + F+K+F  
Sbjct: 5   KTFTTESAIIQGCLKGNRNAQKHLYDQYSGKFLIICRRYIKDHDLAEDVMIEGFMKIFEK 64

Query: 66  LQTFKRDCPVEFWIRRIMINTALKHLRSKQLLTVSHESEEVANLSADDVNLSGYSLDELL 125
           L  ++     E W++RI++  +L  LR  Q L++    +     S           +ELL
Sbjct: 65  LDQYEAKGSFEGWMKRIIVTQSLLTLRKNQKLSMEVNLDHELEKSLPQYEFVDMEANELL 124

Query: 126 SMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNMLLRQEENI 185
            MI +L   Y+ VFNLYAIEGY+H EI ++LGISE TSKSQ SRAR +L+  + + +  +
Sbjct: 125 EMIHALPLGYQTVFNLYAIEGYSHAEISDLLGISENTSKSQLSRARAMLKQKIAQLQ--L 182

Query: 186 KEHVIS 191
           KE  I+
Sbjct: 183 KERRIN 188