Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 181 a.a., putative RNA polymerase sigma-70 factor from Agrobacterium fabrum C58

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 10  DEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTF 69
           D ++ +  C  G R+  R++++  + +++AV  R       AE+++Q++FV+++ +   +
Sbjct: 7   DLDRALAACARGDRNALRVIFEREAGRLIAVAERIVKRRELAEEVVQESFVRIWTHAPQY 66

Query: 70  KRD-CPVEFWIRRIMINTALKHLR-SKQLLTVSHESEEVANLSADDVNLSGYSLD---EL 124
           + D      WI  I+ N AL  LR   + LTV        +  AD+V  +   LD    L
Sbjct: 67  RADHGSARGWIYAIVRNRALNLLRDGSRELTVQDVETLRDSEQADEVVAAWQKLDRNSRL 126

Query: 125 LSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNML 178
              + +L    R    +  + GY+H EI   L +  GT+KS   R    L+  +
Sbjct: 127 YECLGALDETKRQGILMAYVAGYSHGEIAGRLRVPLGTTKSWIRRGLSALRECM 180