Pairwise Alignments

Query, 480 a.a., RNA polymerase sigma-54 factor from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 490 a.a., RNA polymerase factor sigma-54 from Paraburkholderia sabiae LMG 24235

 Score =  237 bits (604), Expect = 8e-67
 Identities = 154/499 (30%), Positives = 261/499 (52%), Gaps = 35/499 (7%)

Query: 4   LDLRQLLSQKLSPQQIQFIKLLQIPTAELEMRIKEELEINPALEEGREEPAE-------- 55
           ++LR   +  L+P+  Q ++LLQ+ + E +  ++  L+ NP LE     P E        
Sbjct: 5   IELRAKQTFALTPRLQQSVRLLQLSSLEFQQELRNALDTNPFLEYDPSAPEEMSANKTAD 64

Query: 56  ------EYSESDEYDSDEDYSKDEDLDLNDYLNDD--EISG--YKMQGDRGGDDEDKEMP 105
                 E   + E D+  + ++ E    +   +DD  + SG  Y     R   D D   P
Sbjct: 65  GTGPDGETLPAAERDTALESAQAEPATESAASSDDGGDYSGDAYGRGPSRYNGDSDAADP 124

Query: 106 IA---MTSTLTDALMDQLGFLNLDDKQYNIGMQLIGSIDHDGYIRRDLSSIANDLAFSQN 162
                +  TL + L D L    LDD+   +   +I ++D DGY+R+DL+ + + +     
Sbjct: 125 TEWARVQPTLHEQLHDALRLYRLDDRDREVARLVIEALDDDGYLRQDLADLTDIVDIEPA 184

Query: 163 IETSEEEIEQVLHLIQSFDPAGIAARDLPECLLLQLERREQDQT-TVLAERIIRESFDEF 221
           +  +E+E+   L L+Q+ D  G+AAR L ECL LQ++    D     +A++++    D  
Sbjct: 185 L--TEDELLVALRLVQTLDRPGLAARSLSECLSLQIDALPGDTPGRSVAKQVVEHHLDRL 242

Query: 222 TKKHYSRIQSKFGISEEELKKAVDLIVRLNPKPGGAGASMTRVQYIIPDFILTNNNGQLE 281
            ++ ++ +Q + G   EEL+ A  L+ +L+PKPG +        YI+PD I+ +   +  
Sbjct: 243 ARREHAELQKQIGCDAEELRVACALVRKLDPKPGNSYGRADD-NYIVPDVIVRSVRNKWV 301

Query: 282 LSLNSRNAPDLRISRSYSDMFDAYDKSDKKDKKLKETVTFVKQKLDAAKWFIDAIRQRQN 341
           +++N    P  RI R Y+++F     + +           + Q+L  A+W I   +QR  
Sbjct: 302 VTVNPAVLPRARIHRMYAELFAQSAGASRSP---------LAQQLQEARWLIRNAQQRFE 352

Query: 342 TLLRTMEAIIKYQHDFFLEGDESELRPMILKDIAEEIGMDISTVSRVANSKAVQTEFGIY 401
           T+ R  E I+ +Q  FF  G E  L+P++L+D+AEE+G+  ST+SR   +K + T  GI+
Sbjct: 353 TIQRVAECIVAHQKPFFQYG-EIALKPLVLRDVAEELGLHESTISRATGNKYMATPRGIF 411

Query: 402 PLKYFFSEGIATDSGEDASSREVKHILKEIIDNESKRKPLSDEKIEKLLNEKGYNIARRT 461
             K+FF   + T+SG   S+  V+ +LKE+I  E+ R PLSD  + K+L ++G  +ARRT
Sbjct: 412 EFKHFFPRELGTESGGTCSAAAVRALLKEMIAAENTRDPLSDVALAKMLADQGVLVARRT 471

Query: 462 VAKYREQLNIPVARLRKEL 480
           VAKYR  + +P A LR+++
Sbjct: 472 VAKYRHLMKVPPAELRRQV 490