Pairwise Alignments

Query, 250 a.a., tRNA pseudouridine synthase A from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 274 a.a., tRNA pseudouridine(38-40) synthase TruA from Pseudomonas fluorescens SBW25

 Score =  141 bits (356), Expect = 1e-38
 Identities = 94/244 (38%), Positives = 125/244 (51%), Gaps = 5/244 (2%)

Query: 2   RYFLEIAYDGTRFHGWQVQPNA-LTVQEVLEDCLSKVLREKINTTGSGRTDTGVHASEQF 60
           R  L + Y G+R+ GWQ Q +  LTVQE LE  LSKV    ++   +GRTD GVHA  Q 
Sbjct: 8   RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 67

Query: 61  VHFDSEQQLDPQQVVYRLNRILPDDISVRNLYLVPNEAHARFDAFARTYHYHI---ALHK 117
           VHFD++ +   +  V   N  LP D+SV    ++P   HARF A AR Y Y I    +  
Sbjct: 68  VHFDTQAERSMKAWVMGANINLPHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQIRP 127

Query: 118 NPFKRYYAWYHSRALDVEKMNEAAAILLKYEDFTTFSKVKGDTKHYRCEMYEAVWRQEGE 177
                   W H R LD E+M EAA  L+   DF+ F   +   K    E++     + G+
Sbjct: 128 AHLNEEITWNH-RPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHGK 186

Query: 178 ELVFTIRANRFLRGMVRLIVGTLVDVGKGKLTVQEFEQVVASQNRSKSSGAAPSEGLYLA 237
            +V  IRA  FL  MVR I G L+ +G G+  V   ++V+ S+ R      A   GLYL 
Sbjct: 187 MIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVAWAKEVLESRVRRTGGVTAHPFGLYLV 246

Query: 238 RVEY 241
            VEY
Sbjct: 247 DVEY 250