Pairwise Alignments

Query, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 602 a.a., single-stranded-DNA-specific exonuclease from Agrobacterium fabrum C58

 Score =  264 bits (674), Expect = 9e-75
 Identities = 186/586 (31%), Positives = 300/586 (51%), Gaps = 34/586 (5%)

Query: 2   EKRWVIS-QEAPVEVVQQLAEQLKISSTLASILCQRGICTFDEAKHFFRPSLQDLH-DPF 59
           E+RWV    +A       +++   I   +A +L  RG+   D+A  F  P+++ L  DP 
Sbjct: 23  EQRWVSRLDQAGQNRALAMSQIHAIPELIARVLAGRGVGV-DDALAFLDPTIRSLMPDPH 81

Query: 60  LMKDMDQAVNRLNNALHSNEKILVYGDYDVDGTTSVALMYGFLRNYTSNIDFYIPDRYKE 119
           ++ D ++A  RL  A+ + EK+ ++GDYDVDG  S AL Y FL ++    + YIPDR  E
Sbjct: 82  MLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALTYRFLAHFGLTPEIYIPDRIFE 141

Query: 120 GYGVSSQGIDWAAENGFTLIISLDCGIKSADKVAYASEKGIDFIICDHHLPDEDIPQAVA 179
           GYG +   +   A NG TLI+++DCG  S + +  A + G D ++ DHH    ++P AVA
Sbjct: 142 GYGPNPAAMQQLAANGATLIVTVDCGSTSHESLQAAKDAGTDVVVIDHHQVGTELPPAVA 201

Query: 180 VLDPKRVDCPYPYKELSGCGVGFKLLQA-FCIQNNIEQEEAY-----KLLDLLVVSIAAD 233
           +++P R D       L   GV F ++ A   +  +    +A+      LLD++ ++   D
Sbjct: 202 LVNPNREDDLSGQGHLCAAGVVFLVMVATLRLLKDRRNRQAFTLDLLSLLDIVALATVCD 261

Query: 234 IVPITGENRILAYFGL---QHLNGPQPMRPGLDALKELADIRSEMDITSIVFGF--APRI 288
           +VP+ G NR     GL   +H+N       GL AL + A +     +T   FGF   PRI
Sbjct: 262 VVPLKGLNRAYVVKGLIAARHMN-----NAGLAALFKKAGLGG--PVTPYHFGFLIGPRI 314

Query: 289 NAAGRMGDAKNSVRMLLAQTKEEAFKMADIINESNKERRSKDTNITKEA-LQMIEQDEFL 347
           NA GR+GDA    R+L      EA  +A+ ++E N+ER++ +  +  EA  + + +    
Sbjct: 315 NAGGRIGDAALGSRLLTIDDTTEAEVIAEKLDELNRERQAMEAAMLAEAEAEALYEYGDG 374

Query: 348 RTANSTVLFKETWHKGVIGIVASRCIEHYYRPTI-ILTQSNGKASGSARSVHGFN----V 402
             A   V  +E WH G++G++ASR  + + RP   I    +GK +GS RS++GF+    V
Sbjct: 375 SGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMGRMV 434

Query: 403 HSAIESCSDLLEQFGGHMYAAGLTLPVENVPAFIERFERVVTDTITEEQKIPQIEIDAPI 462
            +A+E  + LL + GGH  AAGLT+   N+      FE     T+ E  +   ++ID  I
Sbjct: 435 RAAVE--TGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKIDGAI 492

Query: 463 NLKQITRNFYNIIRQMEPFGPGNMRPVFVSECVYDTGSVRVVGDSHLKLRLTQDGFTSID 522
                T    + + Q  P+G G+ +P+F     +    VR+VG +H+K+ L     + +D
Sbjct: 493 GASGATLQLVDQLEQAGPYGSGHSQPIFAVP-AHRLRDVRLVGTAHVKITLEAMDGSRLD 551

Query: 523 AIGFGLGD----YYKAISKGIPFDVCYTVEENIYRGVITLQLRIKD 564
            I F   +         ++G    V  TV  ++++G   +QLR+ D
Sbjct: 552 GIAFRAAEAPLGQMLLNARGRNIHVAGTVGADLWQGQRRVQLRVLD 597