Pairwise Alignments

Query, 760 a.a., ribonuclease R from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

 Score =  364 bits (935), Expect = e-105
 Identities = 229/752 (30%), Positives = 373/752 (49%), Gaps = 52/752 (6%)

Query: 40  ESAREASARKEPSNRKGAPKSAKAVVLEVFSNSPDAVFTMRQVTRRLGVTDKAGREQVQN 99
           E+AREA   + P        S + ++  +      A  +  Q+    G+T +   E ++ 
Sbjct: 10  EAAREAEKYENPI------PSRELILAHLADRGSPA--SREQLVEEFGLTTEDQLEALRR 61

Query: 100 LVKALVRENKLLPVDDDKYMMNLKVDIITGRVDLANSKYAYIVSEEREEDVRVHTEHLQY 159
            ++A+ R+ +L+      Y    K+D+I GR+      + +++ ++  +D+ +    ++ 
Sbjct: 62  RLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMRL 121

Query: 160 AMDGDLVKVEVLPSVRGGRQEGVVVEVLQRSRSEMVGLMELSKNFGFVVPDFKRTYFDVF 219
             DGD     V    R GR+EGV+VEV+ R+   +VG        GFVVPD  +   +V 
Sbjct: 122 VFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEVL 181

Query: 220 VGERHLNDAQSGDKVLVRIIEWPDKPGKNPTGEVIRVFGPAGEHEAEIHSIMAEFGLPFE 279
           +       A+ G  V V+I  WP    + P G+++ V G       EI   +  + +P  
Sbjct: 182 ITPGRNGAAKVGQFVEVKITHWPTARFQ-PQGDIVEVVGNYMAPGMEIDVALRTYDIPHV 240

Query: 280 FPESVEEEAESISDKIPAGEIAKRRDFRDVTTFTIDPADAKDFDDALSIQ------KLEN 333
           +PE+V +EA  +  ++   +  KR D R +   TID  DA+DFDDA+  +      +L +
Sbjct: 241 WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300

Query: 334 GNWEIGVHIADVTHYVTPRSILEKEAFHRATSVYLVDRTIPMLPERLSNGLCSLRPNEEK 393
           G W++ V IADV+ YV   S L+ EA  R  SVY  +R IPMLPE+LSNGLCSL P  ++
Sbjct: 301 GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR 360

Query: 394 LTFSVVFELDENGKLYDTWYGRTIIYSDRRFAYEEAQERIETGEGDFAE----------- 442
           L       + + G++ D  +   +I+S  R  Y +    +ET +   A+           
Sbjct: 361 LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVP 420

Query: 443 EINLLNNIAKKLQAKRFKNGAISFETVEVKFKLDENGKPLSVYVKERKDAHKLIEEYMLL 502
            +  L ++ K L   R   GAI FET E +       K  ++    R DAHKLIEE ML 
Sbjct: 421 HLKQLYSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA 480

Query: 503 ANKKVAEFVYNLSKGKKRPTMVYRTHGSPDPDRLSTFALFARKFGYKV--DPEGDISEEL 560
           AN   AEF+      K     +YR H  P P+RL     F  + G  +    +G   ++ 
Sbjct: 481 ANVATAEFL-----KKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDY 535

Query: 561 NHLTKEIEGKPEQSVLQNLAIRTMAKAKYSTEPEGHFGLAFAHYSHFTSPIRRYPDMMAH 620
             L   I+ +P+  V+Q + +R++++A YS + +GHFGL +  Y+HFTSPIRRYPD++ H
Sbjct: 536 QALLASIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTH 595

Query: 621 RLLQHYLDGGKSA-------------------DQEEYEERCRHSSEMEKRAADAERASIK 661
           R ++  +   ++                    D+   E+     S  E+RA +A R  + 
Sbjct: 596 RAIRSVIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVN 655

Query: 662 YKQVEFMKDTIGNQYKGIVSGVTEWGIFVEIEENKCEGMVRLADINDDYYELDADNYRII 721
           + + EFMKD +G  + G+++ VT +G+FVE+ +   EG+V +  +  DYY  D  ++R+ 
Sbjct: 656 WLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLA 715

Query: 722 GRQTKRIISFGDEVLVEVKSANMADRTIDLDL 753
           G +T R    GD V V+V   ++ +R ID  +
Sbjct: 716 GERTGRSFRLGDTVEVQVMRVDLDERKIDFGM 747



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 29  RRGGESSSNRKESAREASARKEPSNRKGAPKSAKAVVLEVFSNSPDA 75
           + GG+++S  K    E  + K   +RKG PK+  A      S  P A
Sbjct: 827 KSGGKAASGGKSRGAENPSSKPSKHRKGPPKAGSAPAKSGGSRKPKA 873