Pairwise Alignments

Query, 760 a.a., ribonuclease R from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 812 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  372 bits (954), Expect = e-107
 Identities = 223/688 (32%), Positives = 365/688 (53%), Gaps = 32/688 (4%)

Query: 93  GREQVQNL---VKALVRENKLLPVDDDKYMMNLKVDIITGRVDLANSKYAYIVSEEREED 149
           G EQ++ L   ++A+ R+ +L+      Y +  ++D++ G V      Y ++  E R++D
Sbjct: 48  GEEQLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDD 107

Query: 150 VRVHTEHLQYAMDGDLVKVEVLPSVRGGRQEGVVVEVLQRSRSEMVGLMELSKNFGFVVP 209
           + + +E ++  + GD V  + L + R GR+E  +V VL    S++VG        GFVVP
Sbjct: 108 LYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVP 167

Query: 210 DFKRTYFDVFVGERHLNDAQSGDKVLVRIIEWPDKPGKNPTGEVIRVFGPAGEHEAEIHS 269
           D  R  FD+ +    +  A+ G  V+V + + P +  K   G+++ V G        +  
Sbjct: 168 DDSRLSFDILIPPEDVMGARMGFVVVVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDM 226

Query: 270 IMAEFGLPFEFPESVEEEAESISDKIPAGEIAKRRDFRDVTTFTIDPADAKDFDDALSIQ 329
            +    +P+ +P++VE++   + +++P      R D RD+   TID  DA+DFDDA+  +
Sbjct: 227 ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCE 286

Query: 330 KLENGNWEIGVHIADVTHYVTPRSILEKEAFHRATSVYLVDRTIPMLPERLSNGLCSLRP 389
           K   G W + V IADV++YV P + L++EA +R TSVY   + +PMLPE LSNGLCSL P
Sbjct: 287 KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNP 346

Query: 390 NEEKLTFSVVFELDENGKLYDTWYGRTIIYSDRRFAYEEAQERIETGEGDFAEE------ 443
             ++L       +   G+L    +   ++ S  R  Y +    ++ G+ D  E+      
Sbjct: 347 QVDRLCMVCEMTISAKGRLTGYKFYEAVMSSHARLTYTKVWHMLQ-GDQDLREQYAPLVK 405

Query: 444 -INLLNNIAKKLQAKRFKNGAISFETVEVKFKLDENGKPLSVYVKERKDAHKLIEEYMLL 502
            I  L+N+ K L   R + G ISFE+ E KF  +   +   +   +R DAHKLIEE M++
Sbjct: 406 HIEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIM 465

Query: 503 ANKKVAEFVYNLSKGKKRPTMVYRTHGSPDPDRLSTFALFARKFGYKVDPEGDISEELNH 562
           AN   A FV      K +   ++R H  P  + +++F     + G ++ P G+  E  ++
Sbjct: 466 ANISAARFV-----EKAKEPALFRIHDKPTTEAITSFRSVLAELGLEL-PGGNKPEPRDY 519

Query: 563 --LTKEIEGKPEQSVLQNLAIRTMAKAKYSTEPEGHFGLAFAHYSHFTSPIRRYPDMMAH 620
             L + I  +P+  +LQ + +R+M +A Y  E  GHFGLA   Y+HFTSPIRRYPD+  H
Sbjct: 520 AELLESIADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLH 579

Query: 621 RLLQHYL------------DGGKSADQEEYEERCRHSSEMEKRAADAERASIKYKQVEFM 668
           R +++ L             GG     EE  +  +H S  E+RA +A R    + + +FM
Sbjct: 580 RAIKYLLAKEQGNKGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFM 639

Query: 669 KDTIGNQYKGIVSGVTEWGIFVEIEENKCEGMVRLADINDDYYELDADNYRIIGRQTKRI 728
            D +GN +KG+++ VT +G FV ++E   +G+V ++ +++DYY  D    R+IG    + 
Sbjct: 640 LDQVGNVFKGVIASVTGFGFFVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQT 699

Query: 729 ISFGDEVLVEVKSANMADRTIDLDLIET 756
              GD V V V++ NM +R ID  LI +
Sbjct: 700 YRLGDRVEVRVEAVNMDERKIDFSLISS 727