Pairwise Alignments

Query, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Serratia liquefaciens MT49

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 2/175 (1%)

Query: 22  VEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYAFST 81
           V++ D+K++  L+  Y+  V  +V + V   D   D+  E+F KA++ L  F  + AF T
Sbjct: 14  VQKGDQKSFNLLVIRYQHKVASLVSRYVPQGD-VPDVVQESFIKAYRALESFRGDSAFYT 72

Query: 82  WLFRIATNNCIDFIRKNRIKTMSIDSAIKIDNGDEITIDFKDKNLNPQEEAIKNQKIEIM 141
           WL+RIA N   +++     +  S D         E     K+ + NP+   +  +  +I+
Sbjct: 73  WLYRIAVNTAKNYLVAQGRRPPSSDVDANDAENYESAGALKEIS-NPENLMLSEELRQIV 131

Query: 142 QYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELLYDMVK 196
              +  LPE  +  +TLR  + LSYEEIA  ++ P+GTV++++ RARE + + V+
Sbjct: 132 FRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186