Pairwise Alignments

Query, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 191 a.a., RNA polymerase sigma E factor from Escherichia coli BL21

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 4/176 (2%)

Query: 22  VEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYAFST 81
           V++ D+KA+  L+  Y+  V  +V + V + D   D+  EAF KA++ L  F  + AF T
Sbjct: 14  VQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYRALDSFRGDSAFYT 72

Query: 82  WLFRIATNNCIDFIRKNRIKTMSID-SAIKIDNGDEITIDFKDKNLNPQEEAIKNQKIEI 140
           WL+RIA N   +++     +  S D  AI+ +N +      K+ + NP+   +  +  +I
Sbjct: 73  WLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGA-LKEIS-NPENLMLSEELRQI 130

Query: 141 MQYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELLYDMVK 196
           +   +  LPE  +  +TLR  + LSYEEIA  ++ P+GTV++++ RARE + + V+
Sbjct: 131 VFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186