Pairwise Alignments

Query, 540 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 569 a.a., cytochrome-c oxidase chain I from Agrobacterium fabrum C58

 Score =  636 bits (1641), Expect = 0.0
 Identities = 305/553 (55%), Positives = 398/553 (71%), Gaps = 31/553 (5%)

Query: 8   HDAHGHDDHDH---HAPTGWRRWVYATNHKDIGTLYLLFAFTMLMVGGVLALLIRAELFQ 64
           HDAH HDDH H   H P  + RW  +TNHKDIGTLYL+FA    ++GG L++++R EL +
Sbjct: 18  HDAHAHDDHSHDHSHKPGFFARWFLSTNHKDIGTLYLIFAIMAGIIGGGLSVVMRMELQE 77

Query: 65  PGLQLVN------------------PELFNQLTTMHGLIMVFGAIMPAFVG-FANWMIPL 105
           PG+Q+ +                    +FN  TT H LIM+F  +MPA +G FANWMIP+
Sbjct: 78  PGIQIFHGLASMVYGFEGDAAIDGGKHMFNVFTTAHALIMIFFMVMPAMIGGFANWMIPI 137

Query: 106 QIGASDMAFARMNNFSFWLMIPAAIMLVASFFMPGGAPA----AGWTLYAPLTLQ--MGP 159
            IGA DMAF R+NN SFWL++PA I+L+ S F+ G A A     GWT+Y PL+     GP
Sbjct: 138 MIGAPDMAFPRLNNISFWLIVPAFILLLLSLFVEGPAGAYGVGGGWTMYPPLSTSGMPGP 197

Query: 160 SMDAGIFAMHILGASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPV 219
           ++D  IF++H+ GASSI+G+IN I TILNMRAPGMTL KMP+F W+ L+TA+LL+  +PV
Sbjct: 198 AVDLAIFSLHVAGASSILGAINFITTILNMRAPGMTLHKMPLFAWSVLVTAFLLLLSLPV 257

Query: 220 LAGAITMTLTDRHFGTSFFNPAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQVVPAF 279
           LAG ITM LTDR+FGT+FF+P GGGDP++YQH+FWFFGHPEVYI+ILP FGI+S +V  F
Sbjct: 258 LAGGITMLLTDRNFGTAFFSPEGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTF 317

Query: 280 ARKKLFGYASMVYATGSIAILSFVVWAHHMFTTGMPVTGQLFFMYSTMLIAVPTGVKIFN 339
           ++K +FGY  M YA  +I  + F+VWAHHM+T G+ +  Q +F+++TM+IAVPTG+KIF+
Sbjct: 318 SKKPVFGYLGMAYAMVAIGAVGFIVWAHHMYTVGLSLEAQRYFVFATMVIAVPTGIKIFS 377

Query: 340 WIATMWKGSMTFETPMLWAVGFIFVFTIGGFTGLILSVAPIDIQMQDTYYVVAHFHYVLV 399
           WIATMW GS+TF TPM+WA+GFIF+FT+GG TG+ L+ A +D  + DTYYVVAHFHYVL 
Sbjct: 378 WIATMWGGSLTFSTPMVWAIGFIFLFTVGGVTGVQLANAGLDRSLHDTYYVVAHFHYVLS 437

Query: 400 AGSLFAMFSGIYYWLPKWTGVMYSETRGKIHFWWSMISFNITFFPMHFLGLAGMPRRYAD 459
            G++FA+F+G YYW PK TG MY+E  GK+HFW   I  N+ FFP HFLGLAGMPRRY D
Sbjct: 438 LGAVFAIFAGWYYWFPKITGYMYNEFIGKLHFWVMFIGVNLIFFPQHFLGLAGMPRRYID 497

Query: 460 YPMQFADFNAIASVGAFGFGLAQVYFFLAVVVPAMRGKGEKAPQNPW-EGAVGLEWEVPS 518
           YP  +A +N ++S G++   +A V  FL  V  A   K   A  NPW EGA  LEW++ S
Sbjct: 498 YPDAYAGWNMVSSYGSYISAVA-VGIFLFGVWEAF-AKKRIAGNNPWGEGATTLEWQLSS 555

Query: 519 PAPFHTFENPPKL 531
           P P+H +E  P++
Sbjct: 556 PPPYHQWEQLPRI 568