Pairwise Alignments

Query, 324 a.a., TRAP transporter solute receptor, unknown substrate 5 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 327 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 18/298 (6%)

Query: 7   SLSVAAATMAMSLPALAQTKWDLPAAYPATNFHTVN--LTAFANDVDKATGGKLKITVHA 64
           S  + A  + ++ PALA+T   L  ++     H V+  ++  A+     + G+L I ++ 
Sbjct: 10  SAVLLAGCLLLAFPALAKTT--LKLSHNQDKSHAVHKAMSYLADKAKAYSDGELNIRIYP 67

Query: 65  GASLFKAPEIKRAVQGGQAQIGEILLAAYQNEWQMFGADGLPFLATSYADSMKLYKAQKP 124
            A+L    E    +  G  Q+ ++  A+ ++    +    LPFL   + D    Y   K 
Sbjct: 68  NATLGNERESLELMNSGALQMVKVNAASLESFAPEYSVFSLPFL---FRDRDHYYNVLKS 124

Query: 125 ILEKK-LAEQGMTLLYTVAWPPQG---IYSKKPVASAADLKGSKWRAY-SPATSRIAELV 179
            L K+ LA         + W   G    Y+ KP+    DL G K R   SP+   + + +
Sbjct: 125 DLGKRILASSESKGFVGLTWYDGGARSFYAGKPITQPDDLAGMKIRVQQSPSAIAMVKAL 184

Query: 180 GAQPVTVQAAELSQALATGVVESNMTSGATGVDSKLYEHLKYYYDVQAWLPKNAIIMNKR 239
           G  P  +   EL  AL  GVV+    +     D +  E  K+Y   +  +  + ++++ +
Sbjct: 185 GGVPTPMAQGELYTALQQGVVDGGENNPVVYADMRHAEVAKFYSRDEHTMVPDVLVISTK 244

Query: 240 AFDALDKPTQDAVLKAGAEAEARG----WAASQKVNTDTLAILKANGMAVEAPSAALK 293
             + L    + A+ KA  E+  +     W A++K   +++  +  N   V+   +A K
Sbjct: 245 VLNKLSDKERKALYKAADESMQQMKDVIWPAAEKEAYESMKAM--NATVVDIDKSAFK 300