Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1194 a.a., transcription-repair coupling factor from Rhodanobacter sp. FW510-T8

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 585/1191 (49%), Positives = 774/1191 (64%), Gaps = 60/1191 (5%)

Query: 7    TPGKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRC 66
            TP +R     P GSA AL+LA+  A    EG L  +V  D   AQ L  E+  FA GL  
Sbjct: 13   TPRQRRYWTPPHGSARALLLAE--AARTHEG-LLVVVARDTQRAQALEAELKIFAGGLPV 69

Query: 67   ALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFL 126
              FPDWETLPYD FSPH +++S+R+ATL+R+    +     V+++P  T + R+AP S +
Sbjct: 70   LHFPDWETLPYDVFSPHPEIVSQRIATLYRLPNVKRG----VLVVPVATLMQRIAPRSHI 125

Query: 127  AGYTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVD 186
             G        QKLD A  + +L  +GY+HV QV  PG++AVRG L+D+FPMG+  PYR++
Sbjct: 126  TGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIE 185

Query: 187  LFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSR 246
            LFDDE+DSIR+FDP++QRS   V++V LLP REFP+ + A  +FR   RE    D  +  
Sbjct: 186  LFDDEVDSIRSFDPETQRSQQQVDKVDLLPAREFPLTEEAAKEFRGNLRERFPIDVRRCP 245

Query: 247  IYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHR 306
            +Y+D+  GV   GIEYYLPLFF  TAT+FDYL  DA  VL      A  +FW  T +R+ 
Sbjct: 246  LYQDMKEGVTPGGIEYYLPLFFPQTATLFDYLADDALFVLGEGAGEAADQFWAQTAERYD 305

Query: 307  LLRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHVQKLGDLSVVRGA 366
                D ERPVLPP  L+L  E+   + N+  +  V  A  +    +  Q   +L + R  
Sbjct: 306  QRAHDIERPVLPPAELYLPAEKLREQLNKRLRVEVVDAGHEHAVDSGTQPAPELPLNRKG 365

Query: 367  EDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEF--------- 417
            E+P   L+  + +   RVL+ A+S GRRE+L++ L A+G+ P   +  + F         
Sbjct: 366  EEPGTSLRYFLTSYPGRVLIAADSAGRREALIETLAAAGLKPQNVEGWSTFLLPLPAGGG 425

Query: 418  ----------------------------QASDE------KTGIATAALAVGFSWLDDGID 443
                                        QA +E      K  I  A L  GF+     I 
Sbjct: 426  REGVARTGEEAKAPLPPQGIPFGHNPPLQAGEEAKYEGPKFAITIAGLEQGFALTKPAIT 485

Query: 444  FVTETELFAAGPTTRRRRKQEQ--VSDVDALIKDLSELNVGDPVVHNAHGIGRYRGLVNM 501
             +TE EL+     + R RK+ +    D +A+I+DL+EL  G P+VH  HG+GRY+GLV+M
Sbjct: 486  VLTERELYGERVRSERDRKRRRGTARDPEAIIRDLTELTPGAPIVHVDHGVGRYQGLVSM 545

Query: 502  DMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKLGSGQWDK 561
            D+G    DG     EFL +EYA    LYVPV+QL L+ RY+G + + APLH LG   W++
Sbjct: 546  DVG--GMDG-----EFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWER 598

Query: 562  AKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFANDFGFEETADQRGAIHAV 621
            A+RKAAE+VRD AAELL IYA+R AR G +     Q  E F + F FEET DQ  AI AV
Sbjct: 599  ARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSTFPFEETPDQESAIEAV 658

Query: 622  IQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFLAPTTLLAEQHFQTLSDR 681
            + D+ +PR MDR++CGDVGFGKTEVALRAAF   T GRQVA L PTTLLA+QH++  +DR
Sbjct: 659  LNDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVPTTLLAQQHYRNFADR 718

Query: 682  FSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLLSESVKFKDLGLLIIDEEH 741
            F+ WPV+V  +SRF+S KE+  A K LADG +D++VGTHKLL   +KF++LGL+I+DEE 
Sbjct: 719  FADWPVRVDVLSRFKSTKEVNEALKRLADGQIDVIVGTHKLLQPDIKFRNLGLVIVDEEQ 778

Query: 742  RFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRN 801
            RFGVR KE +K LRAEVD+LT+TATPIPRTL MA+ GLRDLS+IAT P  R A++TF+  
Sbjct: 779  RFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPAHRSAVRTFISA 838

Query: 802  EGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAIAHGQMPERELER 861
                 IREA+ REL RGGQVYFLHNEV++IE   ++LE ++P+ARI +AHGQMPERELE 
Sbjct: 839  WDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEGLVPDARIRVAHGQMPERELEG 898

Query: 862  VMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYA 921
            VM DF  QRFNVL+C+TIIETGID+PTANTI++ RAD+FGLAQLHQLRGRVGRSHH+AYA
Sbjct: 899  VMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRGRVGRSHHRAYA 958

Query: 922  YLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGEHQSGNMLEVGF 981
            YL+VPD   +T  A +RL+A+  +EELG+GF LA HDLEIRGAGE+LG+ QSG + E+GF
Sbjct: 959  YLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGF 1018

Query: 982  QLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPNDYCGDVHLRLSFYKKLAT 1041
             LY E+L  AV +LK+G+ PD        T++ LH PAL+P+DY  DVH RL+ YK++A+
Sbjct: 1019 GLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVHARLTLYKRVAS 1078

Query: 1042 AKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYGVVKVDAAPGVTNITFRAN 1101
            A+S D++  L  E++DRFG LP   + L  V  L+ ++TP G+ K+D       I FR  
Sbjct: 1079 ARSEDELRDLQVEMIDRFGLLPDSTKQLFAVASLKLMATPLGIRKLDFGANGGRIVFREK 1138

Query: 1102 PPFEPMRIIELIQK-NRHIKLAGNDKLRIERPLPEVKDRVQLVRDVLRSLG 1151
            P  +PM II+LIQ+  R  KL G DKL++   LP   +R++  ++VL +LG
Sbjct: 1139 PEVDPMTIIKLIQQLPRVYKLDGQDKLKVILDLPGASERIRSAQEVLVALG 1189