Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECOR38

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 560/1147 (48%), Positives = 754/1147 (65%), Gaps = 23/1147 (2%)

Query: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68
            G++  +    G+A A ++A++  R         ++  D  +A RL DE++ F   +   L
Sbjct: 30   GEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEISQFTDQMVMNL 86

Query: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128
              DWETLPYD+FSPHQD+IS RL+TL+++    +     V+++P  T + R+ P SFL G
Sbjct: 87   -ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHG 141

Query: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188
            +    K  Q+L    L+ QL  AGY+HV QV+  GEYA RG L+DLFPMGS +PYR+D F
Sbjct: 142  HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 201

Query: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248
            DDEIDS+R FD DSQR+L  V E+ LLP  EFP D AA   FRS+WR+  E       IY
Sbjct: 202  DDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIY 261

Query: 249  KDIGNGVATAGIEYYLPLFFDDTAT-VFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRL 307
            + +  G   AGIEY+ PLFF +    +F Y   +  +V  GDLE + +RF  DT  R   
Sbjct: 262  QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTLARFEN 321

Query: 308  LRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQ---QDIEHGAHVQKLGDLSVVR 364
               D  RP+LPP++L+L  ++ ++      +  ++      +        QKL DL+V  
Sbjct: 322  RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA 381

Query: 365  GAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEKT 424
              + PL  L+  + +    V+   ES+GRRE+L + L    + P     L E  ASD   
Sbjct: 382  QQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGR 439

Query: 425  GIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIKDLSELNVGDP 484
             +   A   GF      +  + E++L       RRR+   +  + D LI++L+EL++G P
Sbjct: 440  YLMIGAAEHGFVDTVRNLALICESDLLGER-VARRRQDSRRAINPDTLIRNLAELHIGQP 498

Query: 485  VVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGV 544
            VVH  HG+GRY G+  ++ G           E+L L YA+ A LYVPVS L LI RY G 
Sbjct: 499  VVHLEHGVGRYAGMTTLEAGG-------ITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 551

Query: 545  SADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFAN 604
            + + APLHKLG   W +A++KAAE+VRD AAELL+IYA+RAA++G AF++  + Y++F +
Sbjct: 552  AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 611

Query: 605  DFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFL 664
             F FE T DQ  AI+AV+ DM  P  MDRLVCGDVGFGKTEVA+RAAF+AV   +QVA L
Sbjct: 612  SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 671

Query: 665  APTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLLS 724
             PTTLLA+QH+    DRF+ WPV++  +SRFRSAKE T     +A+G +DI++GTHKLL 
Sbjct: 672  VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 731

Query: 725  ESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSV 784
              VKFKDLGLLI+DEEHRFGVRHKE +KA+RA VD+LTLTATPIPRTL MA+ G+RDLS+
Sbjct: 732  SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 791

Query: 785  IATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPE 844
            IAT P RRLA+KTFVR   + V+REA+LRE+ RGGQVY+L+N+VE I+   ++L E++PE
Sbjct: 792  IATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 851

Query: 845  ARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLAQ 904
            ARIAI HGQM ERELERVM DF  QRFNVL+C+TIIETGID+PTANTI++ RAD FGLAQ
Sbjct: 852  ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 911

Query: 905  LHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRGA 964
            LHQLRGRVGRSHHQAYA+L+ P  + +T  A +RL+AI  +E+LG+GF LA HDLEIRGA
Sbjct: 912  LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 971

Query: 965  GEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPND 1024
            GE+LGE QSG+M  +GF LY E+L  AV +LKAGREP L    S  T++ L  P+LLP+D
Sbjct: 972  GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1031

Query: 1025 YCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYGV 1084
            +  DV+ RLSFYK++A+AK+ ++++ +  E++DRFG LP  A+TL+D+ RLR  +   G+
Sbjct: 1032 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1091

Query: 1085 VKVDAAPGVTNITFRANPPFEPMRIIELIQKN-RHIKLAGNDKLRIERPLPEVKDRVQLV 1143
             K++       I F       P  +I L+QK  +H +L G  +L+  + L E K R++ V
Sbjct: 1092 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1151

Query: 1144 RDVLRSL 1150
            R  +R L
Sbjct: 1152 RQFMREL 1158