Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 1022 bits (2643), Expect = 0.0
 Identities = 548/1160 (47%), Positives = 762/1160 (65%), Gaps = 31/1160 (2%)

Query: 1    MDLPKLTPGKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFF 60
            ++L +L  G++  V    GS+ AL+L ++  + +   +L  +V  +     +L  E+ F+
Sbjct: 23   LNLKQLKAGEKRWVGSLLGSSAALLLKEIAEQSR---QLLVLVAKNNQHVAQLESELEFY 79

Query: 61   APGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRL 120
              G++  +FPDWE LPYD  SPHQD++SERLA L  + Q+       ++L+ A+T   R+
Sbjct: 80   --GIKPIIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQG------ILLLSASTLAQRV 131

Query: 121  APPSFLAGYTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSL 180
            AP S++ G  F  +V QK D  + K +L  AGY  V  V   GE+AVRG ++D++  G  
Sbjct: 132  APTSWILGEHFDIRVGQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIYASGQE 191

Query: 181  VPYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLE- 239
             P R+DLFDDEIDS++ FDP++QR+   + + ++LP +EFP+ D  R+ FR R+ E    
Sbjct: 192  APIRIDLFDDEIDSLKFFDPETQRTTSNLTQFKVLPAKEFPLKDG-RSTFRDRYAESFPT 250

Query: 240  GDPTKSRIYKDIGNGVATAGIEYYLPLFFDDTAT-----VFDYLGTDATVVLHGDLEPAF 294
             +P K+ IY+D+  G+A+ GI++YLPLFF   +      +  YL   + V+   DL+   
Sbjct: 251  ANPKKNPIYQDVMEGIASPGIDFYLPLFFSKQSIQTQGMLSAYLPQHSIVITDRDLDECL 310

Query: 295  QRFWQDTKDRHRLLRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHV 354
              FW+D   R+   R +A++P+LPPE LFL         N   + +    Q + + G   
Sbjct: 311  ITFWKDVNRRYEDRRHNADQPILPPEDLFLKPNALLELLNHFPRIIASSEQFEEKAGVIN 370

Query: 355  QKLGD---LSVVRGAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAF 411
              + +   L V    E P  +++ +I N  H VLL+ ES GRRESL D LR++    P  
Sbjct: 371  MAVSEPPRLPVNPKHEKPFHQVKEYIDNAQHPVLLVTESAGRRESLRDALRSTLGDIPTV 430

Query: 412  DSLAEFQASDEKTGIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDA 471
             +   FQ    K  I TA L  G   ++D +  ++E +L+      RRR++Q++VS+ + 
Sbjct: 431  ANFNIFQNDQYKIAITTAPLERGLI-INDQLTVISENQLYEHRVVQRRRKRQQEVSE-EF 488

Query: 472  LIKDLSELNVGDPVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVP 531
            LI+ L+EL++G PVVH  HG+GRY GLV + + ++         EFL L+YA+ A +YVP
Sbjct: 489  LIRSLTELSIGAPVVHIDHGVGRYAGLVTLSIDDQE-------YEFLQLDYAEGAKVYVP 541

Query: 532  VSQLQLIGRYTGVSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHA 591
            V+ L LI RY+G   D APLHK+GS  W+KAKRKA EQ+ D AAELL+I ARR A+ G A
Sbjct: 542  VTNLHLISRYSGGDPDLAPLHKIGSDAWNKAKRKALEQIHDVAAELLHIQARRHAKPGFA 601

Query: 592  FRYSAQDYEVFANDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAA 651
            F      Y  FA+ F +EET DQ  AI A + DM    PMDRLVCGDVGFGKTEVA+RAA
Sbjct: 602  FEIDQSLYMQFASGFAYEETLDQANAIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAA 661

Query: 652  FVAVTGGRQVAFLAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADG 711
            FVAV   +QVA L PTTLLA+QH+++  DRF+ WPV++  +SRF S K      + LADG
Sbjct: 662  FVAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADG 721

Query: 712  SVDIVVGTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRT 771
             VDIV+GTHKLL E+V+FKDLGL+I+DEEHRFGVR KE +KA+RA+VD+LTLTATPIPRT
Sbjct: 722  KVDIVIGTHKLLQENVQFKDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRT 781

Query: 772  LGMALEGLRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETI 831
            L MA  G+RDLS+IAT P RRLA+KTFV+   +  I+EA+LREL RGGQVYFLHNEV++I
Sbjct: 782  LNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVDSI 841

Query: 832  ENRRQKLEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANT 891
            E   + +  ++PEAR+A+AHGQM ERELE+VM+ F  +++NVL+CSTIIETGIDVP ANT
Sbjct: 842  ERTAENIRALVPEARVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANT 901

Query: 892  IVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSG 951
            I++ RADK GLAQLHQLRGRVGRSHHQAYAYL+VP I+ L   A +RLDAIQ+   LG+G
Sbjct: 902  IIIERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAG 961

Query: 952  FYLAMHDLEIRGAGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTT 1011
            F LA  DLEIRGAGE+LGE QSG+M  +G+ LY EML +A  +++ G+ P+  +PLS+T 
Sbjct: 962  FMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTA 1021

Query: 1012 DINLHAPALLPNDYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLID 1071
            +INLH PAL+P++Y GDVH RL FYK+++ A + D++D +  E+VDRFG  P   + L  
Sbjct: 1022 EINLHMPALIPDEYLGDVHQRLLFYKRISNADTQDKLDNIRMELVDRFGLAPQPVKQLFS 1081

Query: 1072 VHRLRCISTPYGVVKVDAAPGVTNITFRANPPFEPMRIIELIQKN-RHIKLAGNDKLRIE 1130
            VH++R  +   G+ KVD      +I F  +   + + II+L+QK   H ++ G  +L++ 
Sbjct: 1082 VHQIRLKAEQLGITKVDIGSHGGSIEFSPDTAVQAISIIQLMQKQPTHFRMEGGQRLKVL 1141

Query: 1131 RPLPEVKDRVQLVRDVLRSL 1150
              L E + R++ +  +L  L
Sbjct: 1142 VMLEEYEQRIEFILKLLDQL 1161