Pairwise Alignments

Query, 473 a.a., RND efflux system, outer membrane lipoprotein, NodT family from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  137 bits (344), Expect = 1e-36
 Identities = 134/485 (27%), Positives = 215/485 (44%), Gaps = 43/485 (8%)

Query: 3   VVAASAAVLSACSVTKPPASVP-VDLPA-----TWYAPPLAHQGSTEQLTTWWGRFDDPV 56
           + A     L  CS+  P   VP VDLPA     T   P  + Q S +    WW  ++D  
Sbjct: 8   LAALMLLALQGCSMA-PTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAPEWWTLYNDSR 66

Query: 57  LTNWVARAQAQSPSVASARAQVFAARAARLGVEAQAGPQLNAVANA-------SRGLTDP 109
           L +   +    +P +A+A A   A++A    + A   PQ++A A         SR L   
Sbjct: 67  LNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDSRPLRGD 126

Query: 110 TMP-LGTSLNAGLQASWAIDLWGGNDARRGSAEAQQDAAGAGWHQARVLVASELAQLYFA 168
           T P +  S  AG   S+ +DLWG    +  + +AQ  A+G     AR+ +  +LA LY  
Sbjct: 127 TQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLYVQ 186

Query: 169 QRLCREQLAVAARDRDSRGVTAENNAISERAGLTAPAVAALARASGAEGAARYRQQNETC 228
                 Q  +  R  D      +         + +      A+   AE  A++ +     
Sbjct: 187 LNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRGQR 246

Query: 229 ERQVKSLTALTGVPEPEVRQRLAAAPDLQALLQSPRMDQLLSV-NAVPAEVIRQRPDVYR 287
                ++  L GV          AA D  +L  SP++  L  + + +P+ ++++RPD+  
Sbjct: 247 NLTEHAIGELVGV----------AASDF-SLSPSPQLISLPGIPSQLPSHLLQRRPDIAA 295

Query: 288 AQRELVAASEDVGVARAALLPSLSLSGSVLRNRFSGGGNEGTFNT-------WSAGPLTL 340
           A+R + AA+ ++GVA+AA  P  SL+G +      GG  +G  N        W+ GPL +
Sbjct: 296 AERRVFAANANIGVAKAAWYPDFSLTGLI------GGQTQGVGNLLSAGNRYWALGPL-V 348

Query: 341 SLPLLGRDALRANTDSAQARYEAAAIAYAGSLRQAVAEVEQALVSISSLRERVASTDTAV 400
           +LP+     L AN   A+A +E A+  Y   + +AV EVE  L  +  L++  A  + A 
Sbjct: 349 NLPIFDGGRLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQE-AQDEQAA 407

Query: 401 AGYGQSFQATEAR-YRVGLASLNELEEARRLKLAADSSAVALQQERINAWIQLYVALGGG 459
           A   Q  Q+     Y+ G  S  ++  A+   L A  +  A+Q  ++ A + L  ALGGG
Sbjct: 408 ADAAQHTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGG 467

Query: 460 FDPVN 464
           +   N
Sbjct: 468 WHASN 472