Pairwise Alignments

Query, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 360 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  151 bits (382), Expect = 2e-41
 Identities = 89/303 (29%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 54  VEVTRVKTIRLQDDAQAVGTLRSRQSVTLKPETSGRVARIVFADGARVKAGQLLVQLDDT 113
           V+V  V   RL+++    G + S +SV+L+ E +G V  I F +G  VK G  LV L+D 
Sbjct: 51  VDVVEVTPERLENNLNVTGNVLSNESVSLRAEITGLVESINFEEGQFVKKGTPLVYLNDD 110

Query: 114 LQRAELSQAQAQLSIARANLKRNQELVAQNFVAQRVVEESQANLQVAEAQVALADARLQR 173
              A+L + +    +      R ++L+A+  ++Q   +          + + L  A+L +
Sbjct: 111 ELTAQLDRLEYTKKLYEGQESRQKQLLAREAISQEEYDIILNQYNTTLSDIKLVKAQLDK 170

Query: 174 MRITAPFAGTVGLRSINLGAYVKDGDSLVNLEDTSMLTVDFRLPERYQSQLAPGQVVQVQ 233
             I APF G +GLR I+ G+ +   D + N+ +   + ++F +PERY SQ+  G  ++  
Sbjct: 171 TVIKAPFDGVLGLRQISAGSVISTTDIIANIVNIDPIKIEFSIPERYASQVQVGSTIEFS 230

Query: 234 LDALPNRPFEAKVLAVDPLLDANGRSISVRAVMPPAADNVLRPGMFARVLIVFSVNERAL 293
            +A      + KV A +P++DAN R++++RA+  P  D    PGMF  +     V E AL
Sbjct: 231 NNASHGLK-KGKVYAYEPVIDANTRTLTLRAI-SPNEDRKFLPGMFVNIRFNLEVEEDAL 288

Query: 294 VVPEEALVPQAGKQYAYVLDEQGEGDAKKRLSRRVEVALGARRGSEVEVVSGLQQGDAVV 353
           +VP ++L+P+      ++++++G       + +  +V +G R  SEV+++ GL  G+ V+
Sbjct: 289 LVPSQSLIPELNGYKLFLVNQEG-------IVQERQVQIGIRTDSEVQILDGLSPGEMVL 341

Query: 354 IAG 356
             G
Sbjct: 342 TTG 344