Pairwise Alignments

Query, 280 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 318 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

 Score = 47.4 bits (111), Expect = 4e-10
 Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 1   VELREFPDVVQSLQALQSGAAHVLSGPYANTIA--QQARGQNLQSFVLQGRAPQ-----V 53
           V   EFP  +  L+AL  G    LS   A+T+    QA G  L  F  +  +P      V
Sbjct: 60  VTWHEFPSGLPLLEALNLGNVD-LSADVADTVPVFTQAAGAKLTYFAREAPSPTAQAILV 118

Query: 54  VVGVSLETMGHNGGVSDLRGRRVGVMATSAASHRVASLVLSKVGLRANDVRYVPLANAAA 113
                L+T+      +DL+G+RV V   +A SH +    L+K GL   D+    L  A  
Sbjct: 119 PADSPLKTL------ADLKGKRVAV-TKAAGSHYLLIQALAKAGLTFKDITPAYLIPADG 171

Query: 114 AVQAFRRGELDAISTTDPTVTQLEQMGSLKVVADTRSVRGTAEVFGGPLPSGCLCAPGSF 173
              AF   ++DA  T DP V   ++  + +++ D   +      +          A   +
Sbjct: 172 RA-AFENHKVDAWVTWDPYVASAQRQQNARILVDGSELASYQRYY---------LAGSDY 221

Query: 174 LTQYPKASQAMADAMVHALKWLQTAGPSDIIKVVPERYFQGDRALYLAAFAR 225
              +P+  Q +  A+  A  W + A P    +++   +   D A    A AR
Sbjct: 222 AKAHPEVLQQVYLALREAGAWTK-ANPEAAARILGPLWGNLDSATVQQANAR 272