Pairwise Alignments

Query, 280 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 320 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 68  VSDLRGRRVGVMATSAASHRVASLVLSKVGLRANDVRYVPLANAAAAVQAFRRGELDAIS 127
           V DL+G++V  +      H +  LVL++ GL+ +DV ++ L      + A  +G++DA+ 
Sbjct: 131 VKDLKGKKVATLRGGNV-HELLVLVLAEAGLKISDVEFLNLGLQDMGI-ALTKGDVDAVL 188

Query: 128 TTDPTVTQLEQMGSLKVVADTRSVRGTAEVFGGPLPSGCLCAPGSFLTQYPKASQAMADA 187
             +P +T+L+  G  + + D   ++              + A GSF  ++P   +A   A
Sbjct: 189 VWEPLLTKLDSEGVSRTLRDGAGLKSNLNP---------IVALGSFAAKHPDVLKAYLQA 239

Query: 188 MVHALKWLQT--AGPSDIIKVV 207
           +    + L++  AG + ++  V
Sbjct: 240 VKRGAEALRSDPAGSAQVLAPV 261