Pairwise Alignments

Query, 666 a.a., Type IV secretion system protein VirD4 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 620 a.a., conjugal transfer protein TraG from Escherichia coli ECOR38

 Score =  113 bits (283), Expect = 2e-29
 Identities = 116/505 (22%), Positives = 225/505 (44%), Gaps = 43/505 (8%)

Query: 78  IAGGSGLVAVLVAIGMSIWRSRQSRLVTTYGSARWANADDIRKAGL-----TQPAGVFLG 132
           +A G+G V  L+    ++ +  + +    +G AR+A  +DIR++        +  G+ +G
Sbjct: 76  VALGAGFVVSLIIPVAALIKLNEKK-ENIFGDARFATINDIRESNSFTLDGDEKDGIIVG 134

Query: 133 QHDRQYLRHEGPEHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKGENWQITAGWRSR 192
             D++ +R+ G       A TR+GKG G+V+  L+ +  S +I D K E + IT+  R  
Sbjct: 135 IKDKKIIRYVGAAFSAMGAGTRAGKGAGIVITNLMKYWWSVIILDPKRECFNITSLIRKV 194

Query: 193 F--SHCLLFNPTDAKSAAYNPLLEVRRGAHE-VRDVQNIADIL-------VDPEGALEKR 242
                   F+P    +  +NPL  V  G  E    ++N++ I+        D    L K 
Sbjct: 195 ILGHEVYKFDPFSPVTHRFNPLYYVSMGTSEGFNQLENLSLIIYPYKTDGADAGSYLNKT 254

Query: 243 NHWEKTSHALLVGAILHVLYAGEDKTL-------RGVANFLSDPASPFELTLHRMMTTPH 295
                 S+A+ +  ++    AG  KTL           N L + A P  L          
Sbjct: 255 AGGVFKSYAVALWFMIKNDKAGL-KTLDIEPVFSMSKINQLFERAEPEHLLSFMNDIRSE 313

Query: 296 LGDGPHPVV---ASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADL 352
           L      +     +  +  +   D  ++ + S  ++ L  + +P VA  T   D+ +  +
Sbjct: 314 LRGKDKTLADIGVAGLKAFIEMEDKTKAQLKSNFLNGLSPFANPNVANATDGNDFDLRQV 373

Query: 353 IAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIARRHKLLLMLDEFP 412
              +  +++Y  +   D +R    I  I  Q+G ++      +D    +H  L +LDEFP
Sbjct: 374 --RKKRMTIYFCIS-GDNARLAEKITNIFFQLGIQVNLEKMPTDDPEIKHDCLFLLDEFP 430

Query: 413 ALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDK--AYGQNHSILDNCHVRVTFATNDER 470
           ++G +D+ ++    +AGY ++  ++ Q  +Q+++  +Y  + ++L +   ++ ++ +D +
Sbjct: 431 SIGAVDYIKSKSGLIAGYKLKLLIVYQVGSQLEEIYSYAGSKTLLASAPCKIVYSASDVK 490

Query: 471 TAKRISETLGTATELRAQRNYAGHRLAPWLDHLMVSRQET----ARPLLTPGEVMQLPPD 526
            A+ +SE +GT T     ++ +  R          SR E+     RPL+T  E++ L   
Sbjct: 491 DARELSEAMGTRTVTIGSKSKSRSRGG-------TSRSESENLIERPLVTTNELLTLKFS 543

Query: 527 EAVVMVSSVAPIKAKKLRYYADANF 551
           E ++ +    PI+ +K  YY    F
Sbjct: 544 EEILAMKGENPIRCEKAFYYLHEYF 568