Pairwise Alignments

Query, 666 a.a., Type IV secretion system protein VirD4 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 610 a.a., conjugal transfer protein TraG from Escherichia coli ECOR27

 Score =  154 bits (388), Expect = 2e-41
 Identities = 131/508 (25%), Positives = 228/508 (44%), Gaps = 35/508 (6%)

Query: 76  GAIAGGSGLVAVLVAIGMSIWRSRQSRLVTTYGSARWANADDIRKA-----GLTQPAGVF 130
           G  A G+G    ++ + M    ++QS+  + YG A++A+  DIRK+     G     G+ 
Sbjct: 65  GIKAIGAGFCGAVMILVMMFLAAKQSK-TSIYGDAKFASDADIRKSRQVTWGDKSKGGII 123

Query: 131 LGQHDRQYLRHEGPEHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKGENWQITAGWR 190
           +G +  + LR+  P+ +   A TR+GKG G+V+P LL +  S ++ D K E + IT+ +R
Sbjct: 124 IGSYKGKLLRYTQPDFISMGAGTRAGKGAGIVIPNLLDYEGSMMVLDPKQECYTITSKYR 183

Query: 191 SRF--SHCLLFNPTDAKSAAYNPLLEVRRGAHE-VRDVQNIADILVDPEGALEKRNHWEK 247
            +   S   LF+P   K+  +N L  V     + V D+ ++ + +   +G      H+  
Sbjct: 184 QKILGSEVYLFDPFSRKTHGFNALAYVDLSTEQGVTDLLSLGETIYTTDGKSGAEKHFNG 243

Query: 248 TSHALLVGAI----LHVLYAGEDKTLRGVANFLSDPA-------SPFELTLHRMMTTPHL 296
            S  + VG        + Y   D    G+ +  S           P E  L         
Sbjct: 244 ESQLMFVGCAELLWFLMTYRAADLRSFGIKHCFSIGTILELFNRIPMEDVLANREVYLET 303

Query: 297 GDGPHPV-----VASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIAD 351
            D PH +          R  +   D  +S V  T    L L+  P     T R D+ I D
Sbjct: 304 TDDPHVLFIIKDALDKFRHYVELGDEPKSSVSGTFTEKLKLFTLPLFRAATDRNDFDIRD 363

Query: 352 LIAAEHPVSLYLVVPPSDISRTKPLIRLILN-QIGRRLTESLDGSDGIARRHKLLLMLDE 410
           +      +S+YL +  +++     L+ L  N  I   + E+ D    +  ++ +L +LDE
Sbjct: 364 M--RRKKMSVYLGIMATEVDIANNLLNLFFNFAIKVSMRENPDFVRDL--KYDVLFLLDE 419

Query: 411 FPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQNH--SILDNCHVRVTFATND 468
           FPA+G + + + A  F+AGY ++   I Q+++Q+++ YG     S+L N   ++ +AT++
Sbjct: 420 FPAIGYMPYIKKAAGFIAGYKLKLLTIYQNISQLNEIYGIQGALSLLANHPCKIIYATSE 479

Query: 469 ERTAKRISETLGTATELRAQRNYAGHRLAPWLDHLMVSRQETARPLLTPGEVMQLPPDEA 528
           +  A + S  LG  T    +        +        S  +T R L+ P E+  L  DE 
Sbjct: 480 KEDADKFSAQLGYTT---IKTKGKSRNTSKGGTSRGESESDTQRALVLPQELSTLKFDEE 536

Query: 529 VVMVSSVAPIKAKKLRYYADANFKRRVL 556
            +++    PIK KK  Y+ D  F  +++
Sbjct: 537 FILLKGENPIKCKKAFYFNDHYFMDKLV 564