Pairwise Alignments

Query, 666 a.a., Type IV secretion system protein VirD4 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 605 a.a., bacterial conjugation protein, ATP binding domain trwB from Caulobacter crescentus NA1000 Δfur

 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 124/513 (24%), Positives = 199/513 (38%), Gaps = 81/513 (15%)

Query: 63  FFDAYAPRVFDTGGAIAGGSGLVAVLVAIGM-SIWRSRQSRLVTTYGSARWAN--ADDIR 119
           F+ A A R  D   A+  G GLV VL  + + +IW          Y   RW    A+D  
Sbjct: 98  FYQAAAERGLD---ALQWG-GLVGVLFGVTLCAIW---------AYLVIRWGETAAEDNA 144

Query: 120 KAGLTQPAGVFLGQHDRQYLRHEGPE----------------HVLTFAPTRSGKGVGL-- 161
           + G +      L +  R   +  GP+                H+     T SGK   L  
Sbjct: 145 RRGASVVTERTLARLTR---KRAGPDAIRLASIPLPTTLETRHIALIGTTGSGKTTTLRQ 201

Query: 162 VVPTLLSWPASAVIHDIKGENWQITAGWRSRFSHCLLFNPTDAKSAAYNPLLEVRRGAHE 221
           ++  +     +A+++D  GE   I+  +R      +L N  DA+ A ++P  E+    H 
Sbjct: 202 MLDAIDKRGDTAIVYDTSGEF--ISHYYRPERGDIIL-NAFDARGAFWSPFDEI----HH 254

Query: 222 VRDVQNIADILVDPEGALEKRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFLSDPAS 281
             D  +IA  LV   GA E+ + W   +  +LV  +L  L+A     L  +   L     
Sbjct: 255 PADADHIARQLVASTGAAEQ-DIWLDAAR-ILVADVLRKLHAEGRTDLSTLIETLG---- 308

Query: 282 PFELTLHRMMTTPHLGDGPHPVVASAAREVLNKSDNERSGVLSTAMSFLGLYR----DPT 337
                L R      L D       S+AR     ++     VL      + L +     P 
Sbjct: 309 ----RLSRDQLKDWLAD------TSSARMFEQGAERASGSVLFMLARCVQLLQYLRASPE 358

Query: 338 VAEVTS-RCDWRIADLIAAEHPVSLYLVVPPSD--ISRTKPLIRLILNQIGRRLTESLDG 394
            A V S R  +   D    E P   ++ VP  +   +  +PL+   L       T  L  
Sbjct: 359 DATVFSFRAHFEALDQRTGERP---WIFVPRQEQYFAAMRPLLACFLECAA---TAILGL 412

Query: 395 SDGIARRHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQN--H 452
           S   +RR  + LMLDE   L ++D     L     +G    +  Q+L Q+ + YG++   
Sbjct: 413 SPHPSRR--IWLMLDELADLPKVDNLARLLPLGRKFGASVVVTFQALGQMRERYGKDGAE 470

Query: 453 SILDNCHVRVTFATNDERTAKRISETLGTA-TELRAQRNYAGHRLAPWLDHLMVSRQETA 511
           ++L N + ++     D  T +  S+ +GT  TE+R       H++      +  SRQ   
Sbjct: 471 ALLANTNTKLFLQLADPDTRQWASQAVGTVETEIRGASENLDHQVGKGRTSIGSSRQ--I 528

Query: 512 RPLLTPGEVMQLPPDEAVVMVSSVAPIKAKKLR 544
            PLL   +  +LPP    + +    P+    +R
Sbjct: 529 LPLLLESQ-FRLPPFHGYLQLPDAFPVARVTIR 560