Pairwise Alignments

Query, 1053 a.a., Probable transmembrane drug efflux protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

 Score = 1000 bits (2586), Expect = 0.0
 Identities = 534/1039 (51%), Positives = 718/1039 (69%), Gaps = 26/1039 (2%)

Query: 20   FNLSQWALDHQAFTRYLMIVLMVLGVVGYFQLGQDEDPPFTFRAMVVRAYWPGATAEQVA 79
            FNLS+WAL ++    +LMI+L V+G + Y +LGQ EDPPFTF+AMV++  WPGATA++V+
Sbjct: 3    FNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVS 62

Query: 80   EQVADRIEKTLQEVPYADKIRSYSKPGETLIIFQLKDSSPPQEVQQIWYTARKKVGDMRG 139
             QV +RIEK L E    ++I S+S+PGE+ + F  +DS    ++ ++WY  RKK+ D+R 
Sbjct: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQ 122

Query: 140  TLPQGVVGPFFNDEFGDVYGVIYALQGEGFSPADKKQVADDVRQRLLRVKDVRKVELFGV 199
            TLP  + GPFFNDEFG  +G IYAL G+GF  A  K  AD ++ +L RV DV KVEL G+
Sbjct: 123  TLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGL 182

Query: 200  QDEKLYIEISQKRLATLGLNLQQVLDALGQQNAVESAGSVQTPQDVVQVRVAGAFNSVEQ 259
            QDEK++IE+S  +LATLGL L  V  AL +QNAV +AG  +TP + VQ+RV+G F +VE+
Sbjct: 183  QDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEE 242

Query: 260  LRAMPIRAANGTQIRLGDIAKIGLGYVDPPQVLVRHEGKDSIALGISMAKGGDIIALGKA 319
            +R  PIR  + T  R+GD+A I  G+ DPP   +R+ G D+I L ++M  GGDI+ LGKA
Sbjct: 243  IRNFPIRVGDRT-FRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGKA 301

Query: 320  LKTTVAGIEATLPAGMTLAQVQDQPSAVTNSVNEFVKVLIEAVVIVLAVSFLALGLHRRP 379
            L+   A ++  LPAGM L +V DQP+AV  SV EFV+VL EA+ IVL VSF +LG     
Sbjct: 302  LEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLG----- 356

Query: 380  GGRGLKRYVLDMRPGLVVFITIPLVLAITFLAMHYWGIGLHKISLGSLIIALGLLVDDAI 439
                       +R G+VV + IPLVLA+TF  M+Y GIGLHKISLG+L++ALGLLVDDAI
Sbjct: 357  -----------VRTGMVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAI 405

Query: 440  IAVEMMVRKLEEGYDMMRAATFTWDATAMPMLTGTLITAAGFLPIGLANSTTGEYTFAIF 499
            IAVEMM  K+E+GYD ++AA+F W +TA PMLTGTLITAAGFLPI  A S+TGEYT +IF
Sbjct: 406  IAVEMMAIKMEQGYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIF 465

Query: 500  AVTVLALVISWVVAVLFVPYLGVVLLK--VKPHAE---GEPHEVFDGPFYVRFRAVVDWC 554
             V  +AL+ SWV AV+FVPYLG  LL    K HA     +  + +  PFY R R +V+WC
Sbjct: 466  QVVTIALLASWVAAVVFVPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWC 525

Query: 555  VQHRWLTIGATILTFVLGIAGMGSVQQQFFPDSSRPEILVDIWLPEGSSMPAMDEVTRRV 614
            V+ R   I  T+L F+  +A    V QQFFP S R E++VD+ L EG+S+    +  +R+
Sbjct: 526  VRRRKTVIVLTLLLFIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRL 585

Query: 615  ENRLAKEEGVRGVTTWVGSGVPRFYLPLDQIFPQTNVSQMIVLPQDLKTREHLRKALPGL 674
            E  L +  G+     +VG+G PRFYLPLDQ  P  + +Q +VL + ++ RE LR  L   
Sbjct: 586  EALLKEHAGIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQT 645

Query: 675  LATEFPEVRGRVKLLPNGPPVPYPVQFRVVGSDPQVLRGLADEVKLAMRENPNMRGVNDN 734
            L  +FP++R RV  L NGPPV YPVQFRV G   + +R LA +V + +RENP++  V+ +
Sbjct: 646  LNEQFPDLRSRVTRLENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLD 705

Query: 735  WNESVKRLRLEVDQAKARALGVSSQSIAQASRTLLSGTTVGQYREGDKLIDIVLRQPLEE 794
            W E  K + L +DQ +ARALGVS+ ++++  ++ L+G++V QYRE ++LI+I+LR  + E
Sbjct: 706  WEEPSKIVYLNIDQDRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHE 765

Query: 795  RDAITSLANAYLPTASGQAIPLLQIARPVFDWEPGVLWRENRDYAITVQGDVVEGLQGAT 854
            R  ++ L +  +PT +G+++ L QIA   + +E G++W  NR   +T++ D+    Q AT
Sbjct: 766  RTELSLLPSLAVPTDNGKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPAT 825

Query: 855  VTAQLQPKLKAISDGWASKGLGAYHIEVAGAVEESSKGSASIVVGVPLMLFIVFTLLMLQ 914
            +  Q+ P L    +G  ++    Y ++V G VE+S++G  S+  GVPL + +V TLLMLQ
Sbjct: 826  LVQQILPTL----EGVRAELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQ 881

Query: 915  LQSFSRSMLVFLTGPLGMAGVAGALLLLNRPFGFVALLGVIALMGMIQRNSVILIDQIEQ 974
            L+SFSR+ +VFLT PLG+ GV   LL+  +PFGFVA+LG IAL GMI RNSVIL+DQIEQ
Sbjct: 882  LRSFSRTAMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQ 941

Query: 975  DRARGVPAWDAIVEAAVRRMRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVL 1034
            D   G+  W AI+EA VRR RPIVLTA AAVLAMIPLSRSVF+GPMAVAIMGGLIVAT L
Sbjct: 942  DIKAGLAPWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATAL 1001

Query: 1035 TLLALPAMYAAWFRVRRPA 1053
            TLL LPA+YAAWFRV+  A
Sbjct: 1002 TLLFLPALYAAWFRVKPQA 1020