Pairwise Alignments

Query, 1053 a.a., Probable transmembrane drug efflux protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1021 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score = 1029 bits (2660), Expect = 0.0
 Identities = 549/1039 (52%), Positives = 724/1039 (69%), Gaps = 28/1039 (2%)

Query: 20   FNLSQWALDHQAFTRYLMIVLMVLGVVGYFQLGQDEDPPFTFRAMVVRAYWPGATAEQVA 79
            FNLS WAL ++    +LMI+L  +G + Y +LGQ EDPPFTF+AMV+R  WPGA+AE+VA
Sbjct: 3    FNLSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEEVA 62

Query: 80   EQVADRIEKTLQEVPYADKIRSYSKPGETLIIFQLKDSSPPQEVQQIWYTARKKVGDMRG 139
             QV +RIEK L E    ++I S+S+PGE+ + F  +DS   +++ ++WY  RKKV D+R 
Sbjct: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKDIPELWYQIRKKVADIRH 122

Query: 140  TLPQGVVGPFFNDEFGDVYGVIYALQGEGFSPADKKQVADDVRQRLLRVKDVRKVELFGV 199
            TLP  + GPFFNDEFG  +G IYAL GEGF  A  K  AD ++ +L RVKDV KV+L G+
Sbjct: 123  TLPPEIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLIGL 182

Query: 200  QDEKLYIEISQKRLATLGLNLQQVLDALGQQNAVESAGSVQTPQDVVQVRVAGAFNSVEQ 259
            QDEK++IE+S  +LATLG+ L+ V  AL +QNAV +AG  +TP + +Q+RV+G F+SVEQ
Sbjct: 183  QDEKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSVEQ 242

Query: 260  LRAMPIRAANGTQIRLGDIAKIGLGYVDPPQVLVRHEGKDSIALGISMAKGGDIIALGKA 319
            +R  PIR  + T  R+GD+A++  G+ DPP   +R  G+D+I L +SM  GGDI+ LGKA
Sbjct: 243  IRQFPIRVGDRT-FRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKDGGDILVLGKA 301

Query: 320  LKTTVAGIEATLPAGMTLAQVQDQPSAVTNSVNEFVKVLIEAVVIVLAVSFLALGLHRRP 379
            L+     +   LPAGM L +V DQP+AV   V EFV+VL+EA+VIVL VSF +LGL    
Sbjct: 302  LEGEFERLAHNLPAGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLGL---- 357

Query: 380  GGRGLKRYVLDMRPGLVVFITIPLVLAITFLAMHYWGIGLHKISLGSLIIALGLLVDDAI 439
                        R GLVV + IPLVLA+TF AMHY+GIGLHKISLG+L++ALGLLVDDAI
Sbjct: 358  ------------RTGLVVALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAI 405

Query: 440  IAVEMMVRKLEEGYDMMRAATFTWDATAMPMLTGTLITAAGFLPIGLANSTTGEYTFAIF 499
            IAVEMM  K+E+GYD ++AA++ W +TA PMLTGTLITAAGFLPI  A S+TGEYT +IF
Sbjct: 406  IAVEMMAIKMEQGYDRLKAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIF 465

Query: 500  AVTVLALVISWVVAVLFVPYLGVVLLK--VKPHA-----EGEPHEVFDGPFYVRFRAVVD 552
             V  +AL+ SWV AV+FVPYLG  LL    K HA     +G   + +  PFY R R +V+
Sbjct: 466  QVVTIALLTSWVAAVVFVPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRLVE 525

Query: 553  WCVQHRWLTIGATILTFVLGIAGMGSVQQQFFPDSSRPEILVDIWLPEGSSMPAMDEVTR 612
            WCV+ R   I  TI  FV  I     V QQFFP S RPE++VD+ L EG+S+    E  +
Sbjct: 526  WCVRRRKTVILLTIAAFVGSILLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVK 585

Query: 613  RVENRLAKEEGVRGVTTWVGSGVPRFYLPLDQIFPQTNVSQMIVLPQDLKTREHLRKALP 672
            ++E  L +++G+     +VG+G PRFYLPLDQ  P  + +Q +VL + ++ RE LR  L 
Sbjct: 586  QLEALLKQQDGIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLI 645

Query: 673  GLLATEFPEVRGRVKLLPNGPPVPYPVQFRVVGSDPQVLRGLADEVKLAMRENPNMRGVN 732
              +  +FP++R RV  L NGPPV YPVQFRV G   +  R LA EV   +RENP++  V+
Sbjct: 646  STVDQQFPDLRARVTRLENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVH 705

Query: 733  DNWNESVKRLRLEVDQAKARALGVSSQSIAQASRTLLSGTTVGQYREGDKLIDIVLRQPL 792
             +W E  K + LE+DQ +ARALGVS+  +A   ++ L GTTV QYRE ++LI+I+LR  L
Sbjct: 706  LDWEEPSKAVFLEIDQDRARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTL 765

Query: 793  EERDAITSLANAYLPTASGQAIPLLQIARPVFDWEPGVLWRENRDYAITVQGDVVEGLQG 852
            +ER  + +L +  LPT +GQ++ L Q+A   + +E G++W  NR   +TV+ D+ +  Q 
Sbjct: 766  QERSELANLGSLALPTDNGQSVALSQVATLEYGFEEGIIWHRNRLPTVTVRADIYDQEQP 825

Query: 853  ATVTAQLQPKLKAISDGWASKGLGAYHIEVAGAVEESSKGSASIVVGVPLMLFIVFTLLM 912
            AT+  Q+ P L+ I     +K    Y +EV G VE+S +G  S+  G+PL + +V +LLM
Sbjct: 826  ATLVKQILPTLQEI----RAKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLM 881

Query: 913  LQLQSFSRSMLVFLTGPLGMAGVAGALLLLNRPFGFVALLGVIALMGMIQRNSVILIDQI 972
            +QL+SFSR+++VFLT PLG+ GV   LL+  +PFGFVA+LG IAL GMI RNSVIL+DQI
Sbjct: 882  IQLRSFSRTVMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQI 941

Query: 973  EQDRARGVPAWDAIVEAAVRRMRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVAT 1032
            EQD A G+  W AI+EA VRR RPIVLTA AAVLAMIPLSRSVF+GPMAVAIMGGLIVAT
Sbjct: 942  EQDIAAGMERWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFYGPMAVAIMGGLIVAT 1001

Query: 1033 VLTLLALPAMYAAWFRVRR 1051
            VLTLL LPA+YAAWFRV++
Sbjct: 1002 VLTLLFLPALYAAWFRVKK 1020